Variant report

Variant	rs56030613
Chromosome Location	chr4:86670583-86670584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86669258..86671290-chr4:86671366..86674206,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs2601857	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs343853	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56156027	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6821799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6822082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6847909	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72656226	0.88[EUR][1000 genomes]
rs72656227	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72656231	0.93[EUR][1000 genomes]
rs72656232	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72656233	0.93[EUR][1000 genomes]
rs72656237	0.98[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72656243	0.93[EUR][1000 genomes]
rs72656255	0.90[EUR][1000 genomes]
rs72656257	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72656262	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72656267	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72656269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72656272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656276	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656289	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72656300	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72658213	0.82[AFR][1000 genomes]
rs7672859	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7691602	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7696560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	esv2763373	chr4:86655128-86673695	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv526211	chr4:86666893-86677107	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86659800-86671600	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:86663400-86673200	Weak transcription	Left Ventricle	heart
3	chr4:86663400-86699800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:86664000-86675600	Weak transcription	Brain Anterior Caudate	brain
5	chr4:86664400-86673000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:86665000-86672800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:86665000-86674600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:86665600-86675600	Weak transcription	Adipose Nuclei	Adipose
9	chr4:86665800-86673200	Weak transcription	Right Ventricle	heart
10	chr4:86666000-86682400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:86667600-86678000	Weak transcription	Stomach Mucosa	stomach
12	chr4:86667800-86676400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:86667800-86676400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr4:86668000-86677800	Weak transcription	Right Atrium	heart
15	chr4:86669000-86675000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:86669200-86670600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:86669200-86670600	Enhancers	HUVEC	blood vessel
18	chr4:86669200-86671400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:86669200-86671600	Enhancers	Fetal Muscle Leg	muscle
20	chr4:86669800-86670600	Enhancers	HSMM	muscle
21	chr4:86669800-86671200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:86670200-86670600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:86670200-86670600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:86670200-86671600	Enhancers	GM12878-XiMat	blood
25	chr4:86670400-86670800	Enhancers	Primary B cells from cord blood	blood
26	chr4:86670400-86671600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:86670400-86672800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:86670400-86673000	Weak transcription	NHDF-Ad	bronchial
29	chr4:86670400-86673400	Weak transcription	Fetal Heart	heart
30	chr4:86670400-86683600	Weak transcription	HSMMtube	muscle

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