Variant report

Variant	rs7672859
Chromosome Location	chr4:86607631-86607632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86601656..86604190-chr4:86605693..86607869,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs2601857	0.93[EUR][1000 genomes]
rs343853	0.90[EUR][1000 genomes]
rs56030613	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs56156027	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6821799	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6822082	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6847909	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72656226	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72656227	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656231	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656233	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656237	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656243	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72656255	0.97[EUR][1000 genomes]
rs72656257	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72656262	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72656267	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72656269	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs72656272	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72656274	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72656275	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72656276	0.93[EUR][1000 genomes]
rs72656277	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72656279	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs72656289	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72656300	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7691602	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7696560	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86591400-86619400	Weak transcription	Pancreas	Pancrea
2	chr4:86597400-86609000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:86603800-86617800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:86603800-86617800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:86603800-86617800	Weak transcription	NHDF-Ad	bronchial
6	chr4:86604200-86624000	Weak transcription	HSMM	muscle
7	chr4:86604600-86609000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:86604600-86617600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:86607400-86611000	Weak transcription	Primary B cells from cord blood	blood
10	chr4:86607600-86614400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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