Variant report

Variant	rs56031943
Chromosome Location	chr11:108538163-108538164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108061371..108062916-chr11:108537049..108538815,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10890878	0.84[EUR][1000 genomes]
rs10890881	0.90[EUR][1000 genomes]
rs10890882	0.91[EUR][1000 genomes]
rs10890884	0.90[EUR][1000 genomes]
rs11212749	0.91[EUR][1000 genomes]
rs11212751	0.90[EUR][1000 genomes]
rs11212753	0.91[EUR][1000 genomes]
rs11212754	0.91[EUR][1000 genomes]
rs11212755	0.91[EUR][1000 genomes]
rs11212757	0.90[EUR][1000 genomes]
rs11212759	0.91[EUR][1000 genomes]
rs11212760	0.90[EUR][1000 genomes]
rs11212763	0.91[EUR][1000 genomes]
rs11212765	0.91[EUR][1000 genomes]
rs11212766	0.91[EUR][1000 genomes]
rs11212767	0.91[EUR][1000 genomes]
rs11212768	0.91[EUR][1000 genomes]
rs11212769	0.91[EUR][1000 genomes]
rs11212770	0.91[EUR][1000 genomes]
rs11602510	0.90[EUR][1000 genomes]
rs11602706	0.91[EUR][1000 genomes]
rs11603815	0.91[EUR][1000 genomes]
rs11605243	0.90[EUR][1000 genomes]
rs11606434	0.90[EUR][1000 genomes]
rs11607423	0.91[EUR][1000 genomes]
rs12222436	0.90[EUR][1000 genomes]
rs12222783	0.89[EUR][1000 genomes]
rs12225174	0.90[EUR][1000 genomes]
rs1381824	0.91[EUR][1000 genomes]
rs1947926	0.89[EUR][1000 genomes]
rs1947927	0.90[EUR][1000 genomes]
rs2126567	0.90[EUR][1000 genomes]
rs2128244	0.91[EUR][1000 genomes]
rs2128246	0.91[EUR][1000 genomes]
rs2169563	0.91[EUR][1000 genomes]
rs2290950	0.91[EUR][1000 genomes]
rs2306117	0.91[EUR][1000 genomes]
rs2615736	0.91[EUR][1000 genomes]
rs2615737	0.91[EUR][1000 genomes]
rs2615739	0.91[EUR][1000 genomes]
rs2615740	0.91[EUR][1000 genomes]
rs2615741	0.91[EUR][1000 genomes]
rs2624128	0.81[EUR][1000 genomes]
rs2624138	0.91[EUR][1000 genomes]
rs2624139	0.91[EUR][1000 genomes]
rs2624149	0.81[EUR][1000 genomes]
rs2726892	0.87[EUR][1000 genomes]
rs35098485	0.90[EUR][1000 genomes]
rs35273823	0.80[ASN][1000 genomes]
rs3758909	0.91[EUR][1000 genomes]
rs3781865	0.91[EUR][1000 genomes]
rs3824985	0.91[EUR][1000 genomes]
rs3858399	0.91[EUR][1000 genomes]
rs3858400	0.91[EUR][1000 genomes]
rs4369370	0.91[EUR][1000 genomes]
rs4753846	0.83[EUR][1000 genomes]
rs4753847	0.84[EUR][1000 genomes]
rs4754343	0.91[EUR][1000 genomes]
rs4754344	0.89[EUR][1000 genomes]
rs4754345	0.91[EUR][1000 genomes]
rs4754347	0.90[EUR][1000 genomes]
rs4754348	0.90[EUR][1000 genomes]
rs4754349	0.91[EUR][1000 genomes]
rs4754352	0.91[EUR][1000 genomes]
rs57535472	0.91[EUR][1000 genomes]
rs58064663	0.86[EUR][1000 genomes]
rs58210719	0.91[EUR][1000 genomes]
rs58286414	0.91[EUR][1000 genomes]
rs61158618	0.91[EUR][1000 genomes]
rs61338713	0.91[EUR][1000 genomes]
rs61913962	0.91[EUR][1000 genomes]
rs61913965	0.91[EUR][1000 genomes]
rs61913966	0.91[EUR][1000 genomes]
rs61913967	0.90[EUR][1000 genomes]
rs61913970	0.91[EUR][1000 genomes]
rs61913972	0.91[EUR][1000 genomes]
rs61913975	0.91[EUR][1000 genomes]
rs61913978	0.91[EUR][1000 genomes]
rs61913979	0.91[EUR][1000 genomes]
rs61913980	0.90[EUR][1000 genomes]
rs61914000	0.90[EUR][1000 genomes]
rs61914001	0.90[EUR][1000 genomes]
rs61914002	0.90[EUR][1000 genomes]
rs61914003	0.90[EUR][1000 genomes]
rs61914008	0.91[EUR][1000 genomes]
rs61914010	0.91[EUR][1000 genomes]
rs61914011	0.91[EUR][1000 genomes]
rs61915165	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61915779	0.91[EUR][1000 genomes]
rs73001741	0.91[EUR][1000 genomes]
rs73001761	0.91[EUR][1000 genomes]
rs73001775	0.91[EUR][1000 genomes]
rs73005539	0.90[EUR][1000 genomes]
rs73007427	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108535200-108538400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:108536400-108539000	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr11:108536600-108539200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:108536600-108541000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:108536600-108541000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:108536600-108578400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:108536800-108538600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:108536800-108538600	Enhancers	Fetal Heart	heart
9	chr11:108536800-108538800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:108536800-108538800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr11:108536800-108539000	Enhancers	Brain Germinal Matrix	brain
12	chr11:108536800-108539600	Enhancers	Ovary	ovary
13	chr11:108536800-108540400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr11:108536800-108541000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:108536800-108542800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:108536800-108546400	Weak transcription	Thymus	Thymus
17	chr11:108536800-108547400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:108536800-108547600	Weak transcription	Colonic Mucosa	Colon
19	chr11:108536800-108548400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:108536800-108549800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr11:108537000-108538200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:108537000-108538400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr11:108537000-108538400	Enhancers	Brain Cingulate Gyrus	brain
24	chr11:108537000-108538600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:108537000-108538600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr11:108537000-108538800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr11:108537000-108538800	Genic enhancers	Right Ventricle	heart
28	chr11:108537000-108539000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr11:108537000-108539400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:108537000-108540200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:108537000-108541000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:108537000-108541000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:108537000-108541000	Weak transcription	NHDF-Ad	bronchial
34	chr11:108537000-108542800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:108537000-108542800	Weak transcription	NH-A	brain
36	chr11:108537000-108545200	Weak transcription	Fetal Intestine Large	intestine
37	chr11:108537000-108545400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:108537000-108545400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:108537000-108545400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:108537000-108545800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:108537000-108546200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr11:108537000-108546200	Weak transcription	Fetal Kidney	kidney
43	chr11:108537200-108538200	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr11:108537200-108538400	Transcr. at gene 5' and 3'	K562	blood
45	chr11:108537200-108538600	Enhancers	Colon Smooth Muscle	Colon
46	chr11:108537200-108538800	Transcr. at gene 5' and 3'	Dnd41	blood
47	chr11:108537200-108541200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:108537200-108543000	Weak transcription	Fetal Lung	lung
49	chr11:108537200-108546600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:108537400-108538200	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell

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