Variant report

Variant	rs560339457
Chromosome Location	chr10:28657001-28657002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28592071..28593938-chr10:28656842..28659307,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1044938	chr10:28601993-28659440	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1839810	chr10:28656826-28665006	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28644400-28665000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28653600-28658400	Enhancers	Fetal Intestine Large	intestine
3	chr10:28654000-28657600	Enhancers	Fetal Intestine Small	intestine
4	chr10:28654000-28658800	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:28654200-28660400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr10:28654600-28657200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:28654600-28657400	Enhancers	Stomach Mucosa	stomach
8	chr10:28654800-28657200	Enhancers	Thymus	Thymus
9	chr10:28655000-28659600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:28655200-28657600	Enhancers	Primary hematopoietic stem cells	blood
11	chr10:28655400-28657600	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr10:28655400-28657800	Enhancers	Fetal Thymus	thymus
13	chr10:28655400-28658000	Enhancers	HepG2	liver
14	chr10:28655400-28658800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:28655800-28657400	Enhancers	Fetal Muscle Leg	muscle
16	chr10:28655800-28658000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:28656000-28657200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr10:28656000-28657400	Enhancers	Small Intestine	intestine
19	chr10:28656200-28657200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:28656200-28657200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr10:28656200-28657200	Enhancers	Placenta	Placenta
22	chr10:28656200-28657800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr10:28656200-28661800	Weak transcription	Colonic Mucosa	Colon
24	chr10:28656400-28657200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr10:28656400-28657200	Enhancers	Liver	Liver
26	chr10:28656400-28657200	Enhancers	GM12878-XiMat	blood
27	chr10:28656600-28657400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr10:28656600-28657600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr10:28656600-28657800	Enhancers	Fetal Muscle Trunk	muscle
30	chr10:28656800-28657200	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr10:28656800-28657200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
32	chr10:28656800-28657200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr10:28656800-28657200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr10:28656800-28657200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr10:28656800-28657400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:28656800-28657400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:28656800-28657400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:28656800-28657400	Enhancers	Duodenum Mucosa	Duodenum
39	chr10:28656800-28657800	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr10:28656800-28658600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:28656800-28659800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr10:28657000-28657200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:28657000-28657200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr10:28657000-28657400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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