Variant report

Variant	rs56034323
Chromosome Location	chr1:56212500-56212501
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17112722	1.00[AMR][1000 genomes]
rs17112732	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57164068	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57723429	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60260322	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60776292	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6588571	1.00[AMR][1000 genomes]
rs74072756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7546460	1.00[AMR][1000 genomes]
rs7550279	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv546304	chr1:56195659-56240015	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56208400-56213000	Weak transcription	NHDF-Ad	bronchial
2	chr1:56210800-56213800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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