Variant report

Variant	rs7550279
Chromosome Location	chr1:56137796-56137797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17112722	1.00[AMR][1000 genomes]
rs17112732	1.00[AMR][1000 genomes]
rs56034323	1.00[AMR][1000 genomes]
rs57164068	1.00[AMR][1000 genomes]
rs57723429	1.00[AMR][1000 genomes]
rs60260322	1.00[AMR][1000 genomes]
rs60776292	1.00[AMR][1000 genomes]
rs6588571	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072756	1.00[AMR][1000 genomes]
rs7546460	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526148	chr1:56101597-56146450	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56135600-56139000	Weak transcription	Fetal Heart	heart
2	chr1:56135800-56138600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56135800-56139000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:56135800-56162000	Weak transcription	Aorta	Aorta
5	chr1:56136800-56139800	Weak transcription	HSMM	muscle
6	chr1:56137600-56139400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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