Variant report

Variant	rs56037065
Chromosome Location	chr2:62706660-62706661
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59967862	0.81[AMR][1000 genomes]
rs6722434	1.00[EUR][1000 genomes]
rs72805574	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72805580	0.83[EUR][1000 genomes]
rs72805591	0.83[EUR][1000 genomes]
rs72883592	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72885210	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535766	chr2:62177655-62929746	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916190	chr2:62233785-63006200	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv932487	chr2:62258290-63006200	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv2751	chr2:62691264-62737131	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:62703000-62712400	Weak transcription	A549	lung
2	chr2:62703400-62707000	Enhancers	Adipose Nuclei	Adipose
3	chr2:62703600-62711600	Weak transcription	Liver	Liver
4	chr2:62703600-62724800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:62705400-62706800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:62705600-62709800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:62705600-62713200	Weak transcription	Lung	lung
8	chr2:62705800-62706800	Weak transcription	Left Ventricle	heart
9	chr2:62705800-62710000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:62705800-62710000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr2:62705800-62710400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:62705800-62711400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:62705800-62711400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr2:62705800-62711400	Weak transcription	Ovary	ovary
15	chr2:62705800-62712000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:62705800-62712200	Weak transcription	NHDF-Ad	bronchial
17	chr2:62705800-62712800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:62705800-62712800	Weak transcription	Fetal Muscle Leg	muscle
19	chr2:62705800-62713000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr2:62705800-62713200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:62705800-62713200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:62705800-62732200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr2:62706400-62710000	Weak transcription	HepG2	liver
24	chr2:62706400-62711400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr2:62706600-62726600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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