Variant report

Variant	rs59967862
Chromosome Location	chr2:62712509-62712510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:62707580..62709394-chr2:62711860..62714496,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56037065	0.81[AMR][1000 genomes]
rs6722434	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72805574	0.81[AMR][1000 genomes]
rs72883592	0.81[AMR][1000 genomes]
rs72885210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv535766	chr2:62177655-62929746	Bivalent/Poised TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv916190	chr2:62233785-63006200	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv932487	chr2:62258290-63006200	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv535767	chr2:62461582-63413596	Bivalent Enhancer Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv2751	chr2:62691264-62737131	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:62703600-62724800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:62705600-62713200	Weak transcription	Lung	lung
3	chr2:62705800-62712800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:62705800-62712800	Weak transcription	Fetal Muscle Leg	muscle
5	chr2:62705800-62713000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr2:62705800-62713200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:62705800-62713200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:62705800-62732200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:62706600-62726600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:62710600-62713000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:62711400-62714600	Enhancers	Adipose Nuclei	Adipose
12	chr2:62711600-62712800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr2:62712000-62712800	Enhancers	HepG2	liver
14	chr2:62712200-62713000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:62712200-62713000	Flanking Active TSS	Liver	Liver
16	chr2:62712200-62713600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:62712200-62714600	Enhancers	Fetal Stomach	stomach
18	chr2:62712200-62714600	Enhancers	NHDF-Ad	bronchial
19	chr2:62712200-62715400	Enhancers	Ovary	ovary
20	chr2:62712400-62713000	Enhancers	A549	lung
21	chr2:62712400-62713200	Enhancers	Osteobl	bone
22	chr2:62712400-62713800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:62712400-62714200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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