Variant report

Variant	rs56037543
Chromosome Location	chr20:16378073-16378074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs58254359	0.83[EUR][1000 genomes]
rs7269973	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898709	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73898711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8114159	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8123195	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2763223	chr20:16369733-16379705	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16316000-16384400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr20:16343600-16384600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr20:16344400-16380200	Weak transcription	HSMMtube	muscle
4	chr20:16345000-16391200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr20:16345400-16391000	Weak transcription	Brain Germinal Matrix	brain
6	chr20:16346600-16393600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr20:16347600-16392000	Weak transcription	Fetal Kidney	kidney
8	chr20:16348400-16383600	Weak transcription	Small Intestine	intestine
9	chr20:16349200-16380000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr20:16349800-16381600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr20:16350000-16384000	Weak transcription	HepG2	liver
12	chr20:16350000-16384200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr20:16350800-16384200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr20:16353000-16384200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr20:16355400-16380400	Weak transcription	A549	lung
16	chr20:16355400-16385200	Weak transcription	Brain Substantia Nigra	brain
17	chr20:16356000-16384200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr20:16356200-16380000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr20:16357200-16383600	Weak transcription	Brain Anterior Caudate	brain
20	chr20:16357800-16385400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr20:16359800-16387800	Weak transcription	Placenta	Placenta
22	chr20:16360600-16378400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr20:16360600-16380200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr20:16360600-16382400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr20:16360600-16385200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr20:16360800-16380000	Weak transcription	Brain Hippocampus Middle	brain
27	chr20:16360800-16385000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr20:16360800-16385200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr20:16361000-16380400	Weak transcription	Liver	Liver
30	chr20:16361000-16381200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr20:16364600-16385400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr20:16364800-16379800	Weak transcription	Gastric	stomach
33	chr20:16365400-16379800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr20:16366400-16391400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr20:16367200-16379000	Weak transcription	Lung	lung
36	chr20:16367200-16387800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr20:16368400-16378800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr20:16372200-16389400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr20:16372400-16389200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr20:16372600-16379600	Weak transcription	Fetal Intestine Large	intestine
41	chr20:16372600-16383600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr20:16372600-16388200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr20:16372600-16404600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr20:16372800-16379800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr20:16372800-16384200	Weak transcription	Esophagus	oesophagus
46	chr20:16372800-16385400	Weak transcription	Spleen	Spleen
47	chr20:16373200-16384400	Weak transcription	NHEK	skin
48	chr20:16373400-16378800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr20:16373400-16379000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr20:16373400-16379400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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