Variant report

Variant	rs58254359
Chromosome Location	chr20:16335250-16335251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16334101..16335640-chr20:16341241..16344211,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16997548	0.81[AFR][1000 genomes]
rs56037543	0.83[EUR][1000 genomes]
rs7269973	0.83[EUR][1000 genomes]
rs73898705	0.83[EUR][1000 genomes]
rs73898708	0.83[EUR][1000 genomes]
rs73898709	0.83[EUR][1000 genomes]
rs73898711	0.83[EUR][1000 genomes]
rs8114159	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16262600-16346200	Weak transcription	Gastric	stomach
2	chr20:16276400-16348200	Weak transcription	Colon Smooth Muscle	Colon
3	chr20:16289400-16348000	Weak transcription	Colonic Mucosa	Colon
4	chr20:16295600-16349000	Weak transcription	HepG2	liver
5	chr20:16296600-16345200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr20:16315400-16345000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr20:16315400-16346200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr20:16315400-16348000	Weak transcription	Fetal Intestine Large	intestine
9	chr20:16315400-16364400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr20:16315600-16346200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr20:16315600-16348000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr20:16315600-16348400	Weak transcription	Spleen	Spleen
13	chr20:16315800-16357600	Weak transcription	Right Ventricle	heart
14	chr20:16316000-16344000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr20:16316000-16346200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr20:16316000-16384400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr20:16316200-16347200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr20:16318600-16346200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr20:16318600-16348400	Weak transcription	Esophagus	oesophagus
20	chr20:16318800-16345000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr20:16318800-16368200	Weak transcription	Primary B cells from cord blood	blood
22	chr20:16319000-16345800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr20:16319000-16346200	Weak transcription	Pancreas	Pancrea
24	chr20:16319000-16346400	Weak transcription	Fetal Intestine Small	intestine
25	chr20:16320600-16336600	Weak transcription	Primary T cells from cord blood	blood
26	chr20:16322600-16346000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr20:16326200-16346000	Weak transcription	Liver	Liver
28	chr20:16327200-16336600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr20:16327200-16336800	Weak transcription	Ovary	ovary
30	chr20:16327200-16344000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr20:16327400-16336000	Weak transcription	Adipose Nuclei	Adipose
32	chr20:16327400-16346400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr20:16327600-16348200	Weak transcription	Left Ventricle	heart
34	chr20:16329200-16345200	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr20:16330000-16344800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr20:16330000-16346200	Weak transcription	Lung	lung
37	chr20:16331400-16348600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr20:16332400-16343800	Weak transcription	Brain Angular Gyrus	brain
39	chr20:16332400-16344600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr20:16332400-16346200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr20:16332400-16347200	Weak transcription	Brain Anterior Caudate	brain
42	chr20:16332400-16348200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr20:16332600-16343600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr20:16332800-16343600	Weak transcription	Brain Hippocampus Middle	brain
45	chr20:16332800-16344000	Weak transcription	Brain Substantia Nigra	brain
46	chr20:16333400-16347200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr20:16333600-16339800	Weak transcription	Fetal Muscle Leg	muscle
48	chr20:16333600-16347200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr20:16333600-16348000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr20:16333600-16348200	Weak transcription	Psoas Muscle	Psoas

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