Variant report

Variant	rs560409029
Chromosome Location	chr6:33582212-33582213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33581288..33583329-chr6:33600315..33602072,2	K562	blood:
2	chr6:33576666..33582891-chr6:33586745..33591603,10	MCF-7	breast:
3	chr6:33574216..33577618-chr6:33579266..33582393,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000096433	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
5	nsv5250	chr6:33565017-33598370	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
6	esv3471778	chr6:33581874-33587572	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	esv3502814	chr6:33581974-33586972	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv1808252	chr6:33582090-33585127	Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv1810285	chr6:33582090-33585127	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv1838904	chr6:33582090-33585127	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1840099	chr6:33582090-33585127	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33574400-33583200	Enhancers	HMEC	breast
2	chr6:33574600-33582400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:33577400-33583000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:33578000-33587000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:33578800-33588000	Weak transcription	Gastric	stomach
6	chr6:33579000-33583800	Weak transcription	Right Ventricle	heart
7	chr6:33579200-33586600	Weak transcription	Fetal Lung	lung
8	chr6:33579200-33587000	Weak transcription	Pancreas	Pancrea
9	chr6:33579400-33587000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:33579400-33587000	Weak transcription	Right Atrium	heart
11	chr6:33579400-33588000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:33580000-33586800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:33580000-33587600	Weak transcription	Brain Substantia Nigra	brain
14	chr6:33580800-33582400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:33580800-33582400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:33580800-33583000	Enhancers	NHDF-Ad	bronchial
17	chr6:33580800-33583400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:33581000-33582400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:33581000-33582400	Enhancers	Stomach Mucosa	stomach
20	chr6:33581000-33583000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:33581000-33583000	Enhancers	HSMMtube	muscle
22	chr6:33581400-33583000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:33581600-33588000	Weak transcription	Brain Anterior Caudate	brain
24	chr6:33581800-33582400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:33581800-33586800	Weak transcription	A549	lung
26	chr6:33582000-33582400	Enhancers	HepG2	liver
27	chr6:33582000-33583000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:33582000-33583000	Enhancers	HSMM	muscle
29	chr6:33582000-33583000	Enhancers	Osteobl	bone
30	chr6:33582000-33583200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:33582000-33584000	Weak transcription	Fetal Intestine Small	intestine
32	chr6:33582000-33586000	Weak transcription	Spleen	Spleen
33	chr6:33582000-33586600	Weak transcription	Placenta	Placenta
34	chr6:33582000-33586800	Weak transcription	Colonic Mucosa	Colon
35	chr6:33582000-33587000	Weak transcription	Left Ventricle	heart
36	chr6:33582000-33587400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:33582000-33587400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:33582000-33587400	Weak transcription	NHLF	lung
39	chr6:33582200-33582400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:33582200-33583200	Enhancers	Muscle Satellite Cultured Cells	--
41	chr6:33582200-33584000	Weak transcription	Fetal Intestine Large	intestine
42	chr6:33582200-33586000	Weak transcription	HUVEC	blood vessel
43	chr6:33582200-33586000	Weak transcription	NHEK	skin
44	chr6:33582200-33586800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:33582200-33587200	Enhancers	Hela-S3	cervix
46	chr6:33582200-33587800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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