Variant report

Variant	rs560453413
Chromosome Location	chr7:2955340-2955341
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:2912665..2915404-chr7:2954032..2956544,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv526132	chr7:2904928-2968361	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv887316	chr7:2904928-2983520	Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv1025727	chr7:2938301-3064008	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv984495	chr7:2943735-2979225	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv528122	chr7:2955097-2976767	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2926800-2968000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:2933400-2987200	Weak transcription	Gastric	stomach
3	chr7:2943400-2961200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:2943800-2988200	Strong transcription	Primary T cells from cord blood	blood
5	chr7:2944000-2988200	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr7:2944200-2981800	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr7:2944200-2987400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:2944400-2986800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:2944400-2987400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:2944400-2988400	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr7:2944800-2964200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:2944800-2987400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr7:2944800-2987600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:2944800-2987600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr7:2945400-2961800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:2945400-2961800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:2945400-2987400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:2945800-2959400	Weak transcription	HUVEC	blood vessel
19	chr7:2947600-2964200	Strong transcription	Thymus	Thymus
20	chr7:2948400-2961600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:2948400-2980600	Strong transcription	Primary B cells from peripheral blood	blood
22	chr7:2948800-2959000	Weak transcription	Esophagus	oesophagus
23	chr7:2948800-2961000	Weak transcription	Right Atrium	heart
24	chr7:2949000-2966400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:2949400-2956800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr7:2949400-2957400	Strong transcription	Primary B cells from cord blood	blood
27	chr7:2949800-2958400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:2949800-2977400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr7:2951000-2955400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:2951000-2988400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr7:2951400-2960600	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:2951800-2956000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr7:2952200-2955800	Weak transcription	GM12878-XiMat	blood
34	chr7:2952600-2956400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:2953200-2957000	Strong transcription	Fetal Thymus	thymus
36	chr7:2953400-2962800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr7:2953600-2955600	Strong transcription	Fetal Intestine Small	intestine
38	chr7:2954000-2984800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr7:2954600-2955400	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr7:2954600-2956600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:2954600-2959600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr7:2954800-2955800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
43	chr7:2955000-2955400	Genic enhancers	Spleen	Spleen
44	chr7:2955200-2955600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr7:2955200-2957000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr7:2955200-2960600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links