Variant report

Variant	rs56057597
Chromosome Location	chr11:72127506-72127507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72122262..72124847-chr11:72125756..72129287,3	K562	blood:
2	chr11:71934402..71936993-chr11:72126519..72128667,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165458	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2365379	0.80[AFR][1000 genomes]
rs56353029	1.00[ASN][1000 genomes]
rs60658818	1.00[ASN][1000 genomes]
rs61484955	1.00[ASN][1000 genomes]
rs7129700	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73530719	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9282688	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72106800-72136800	Weak transcription	Esophagus	oesophagus
2	chr11:72106800-72136800	Weak transcription	NHLF	lung
3	chr11:72109600-72137000	Weak transcription	Osteobl	bone
4	chr11:72109800-72139200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:72110000-72134600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:72110600-72139000	Weak transcription	Colonic Mucosa	Colon
7	chr11:72111800-72138400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:72114000-72130000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:72114000-72132000	Weak transcription	Dnd41	blood
10	chr11:72114000-72138000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr11:72114200-72138600	Weak transcription	Ovary	ovary
12	chr11:72115200-72136600	Weak transcription	Aorta	Aorta
13	chr11:72117200-72128600	Enhancers	HepG2	liver
14	chr11:72117800-72129200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:72118400-72128800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:72123400-72128600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:72123400-72128600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:72123400-72128800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:72123400-72128800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:72123400-72128800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:72123400-72132200	Weak transcription	HMEC	breast
22	chr11:72123400-72132400	Weak transcription	Primary B cells from cord blood	blood
23	chr11:72123400-72132400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:72123400-72134200	Weak transcription	Fetal Lung	lung
25	chr11:72123400-72136000	Weak transcription	Brain Germinal Matrix	brain
26	chr11:72123400-72136200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:72123400-72136600	Weak transcription	Spleen	Spleen
28	chr11:72123400-72136800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:72123600-72128800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:72123600-72132200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:72123600-72136600	Weak transcription	Fetal Brain Male	brain
32	chr11:72125400-72128400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr11:72125400-72128800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:72125400-72128800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:72125400-72128800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:72125400-72128800	Weak transcription	Left Ventricle	heart
37	chr11:72125400-72128800	Weak transcription	Right Atrium	heart
38	chr11:72125400-72128800	Weak transcription	Right Ventricle	heart
39	chr11:72125400-72129000	Weak transcription	Fetal Brain Female	brain
40	chr11:72125400-72132600	Weak transcription	Placenta	Placenta
41	chr11:72125400-72136200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:72125400-72137400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:72125400-72138800	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr11:72125400-72139200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:72125400-72141600	Weak transcription	Colon Smooth Muscle	Colon
46	chr11:72125400-72141800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr11:72125400-72142000	Weak transcription	HSMM	muscle
48	chr11:72125600-72128600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:72125600-72128600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:72125600-72128600	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links