Variant report

Variant	rs61484955
Chromosome Location	chr11:71892691-71892692
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71853125..71854944-chr11:71891324..71892926,2	MCF-7	breast:
2	chr11:71891814..71894783-chr11:71939408..71941980,2	MCF-7	breast:
3	chr11:71802059..71803123-chr11:71892536..71893396,4	MCF-7	breast:
4	chr11:71892089..71899767-chr11:71932198..71938426,12	MCF-7	breast:
5	chr11:71814518..71815081-chr11:71892378..71893328,2	MCF-7	breast:
6	chr11:71812901..71816436-chr11:71891648..71895235,3	MCF-7	breast:
7	chr11:71822765..71825342-chr11:71891494..71894881,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110200	Chromatin interaction
ENSG00000238768	Chromatin interaction
ENSG00000165458	Chromatin interaction
ENSG00000149357	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56057597	1.00[ASN][1000 genomes]
rs56353029	1.00[ASN][1000 genomes]
rs60658818	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129700	1.00[ASN][1000 genomes]
rs73530719	1.00[ASN][1000 genomes]
rs9282688	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3493111	chr11:71850822-71893073	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3493112	chr11:71850822-71893073	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2513904	chr11:71852934-71892793	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv972042	chr11:71887920-71894534	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71888200-71895800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:71889600-71900200	Weak transcription	Fetal Intestine Small	intestine
3	chr11:71890800-71895400	Enhancers	HMEC	breast
4	chr11:71891000-71893400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:71891400-71893000	Enhancers	Fetal Thymus	thymus
6	chr11:71891600-71900200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:71891800-71892800	Flanking Active TSS	NHEK	skin
8	chr11:71891800-71900400	Weak transcription	Hela-S3	cervix
9	chr11:71892000-71892800	Enhancers	Right Ventricle	heart
10	chr11:71892000-71906600	Weak transcription	Esophagus	oesophagus
11	chr11:71892200-71892800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:71892200-71893000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:71892200-71893000	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr11:71892400-71893000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:71892400-71893000	Enhancers	Osteobl	bone
16	chr11:71892400-71895000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:71892600-71892800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:71892600-71892800	Enhancers	Placenta Amnion	Placenta Amnion
19	chr11:71892600-71892800	Enhancers	HSMMtube	muscle
20	chr11:71892600-71892800	Enhancers	K562	blood
21	chr11:71892600-71893000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:71892600-71893000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:71892600-71893000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr11:71892600-71893000	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr11:71892600-71893000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:71892600-71893400	Enhancers	Fetal Intestine Large	intestine

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