Variant report

Variant	rs56061746
Chromosome Location	chr10:94471680-94471681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2275729	0.92[ASN][1000 genomes]
rs41290176	0.92[ASN][1000 genomes]
rs56372770	0.83[AFR][1000 genomes]
rs7081035	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081294	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081351	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081745	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099393	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149117	0.89[AFR][1000 genomes]
rs74149118	0.86[AFR][1000 genomes]
rs74149119	0.83[AFR][1000 genomes]
rs74149121	0.83[AFR][1000 genomes]
rs74149123	0.83[AFR][1000 genomes]
rs74149124	0.81[AFR][1000 genomes]
rs74149128	0.83[AFR][1000 genomes]
rs74149129	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv825517	chr10:94397149-94472509	Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94459800-94474000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:94462400-94473400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:94468600-94472400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:94471000-94477200	Enhancers	Primary B cells from cord blood	blood
5	chr10:94471200-94472400	Enhancers	HepG2	liver
6	chr10:94471200-94472600	Enhancers	Liver	Liver
7	chr10:94471200-94473200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:94471200-94473200	Enhancers	GM12878-XiMat	blood
9	chr10:94471200-94481200	Enhancers	Primary B cells from peripheral blood	blood
10	chr10:94471400-94472200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:94471400-94472400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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