Variant report

Variant	rs560619614
Chromosome Location	chr8:1772101-1772102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr8:1771250-1772194	HCT-116	colon:	n/a	chr8:1771501-1771517 chr8:1771509-1771525
2	FOS	chr8:1771881-1772135	MCF10A-Er-Src	breast:	n/a	n/a
3	MAX	chr8:1771733-1772151	A549	lung:	n/a	chr8:1771949-1771962 chr8:1771950-1771960 chr8:1771949-1771962 chr8:1771951-1771960 chr8:1771950-1771960 chr8:1771951-1771961 chr8:1771950-1771961 chr8:1771950-1771961 chr8:1771951-1771961 chr8:1771891-1771901 chr8:1771950-1771961
4	ELF1	chr8:1771744-1772133	K562	blood:	n/a	chr8:1771865-1771877
5	POLR2A	chr8:1771549-1772317	H1-neurons	neurons:	n/a	n/a
6	NRF1	chr8:1771370-1772188	SK-N-SH	brain:	n/a	chr8:1771971-1771985 chr8:1771901-1771910 chr8:1771784-1771793 chr8:1771899-1771910 chr8:1771899-1771913 chr8:1771938-1771947
7	SP2	chr8:1771799-1772163	H1-hESC	embryonic stem cell:	n/a	chr8:1771933-1771948 chr8:1772002-1772025 chr8:1772019-1772029
8	USF1	chr8:1771764-1772143	A549	lung:	n/a	n/a
9	EGR1	chr8:1771560-1772210	ECC-1	luminal epithelium:	n/a	chr8:1771900-1771909 chr8:1771894-1771905 chr8:1771635-1771650 chr8:1771887-1771900 chr8:1771862-1771875 chr8:1771894-1771904 chr8:1771933-1771946 chr8:1771888-1771898 chr8:1771862-1771875 chr8:1771892-1771906 chr8:1771935-1771945 chr8:1771972-1771981
10	MAX	chr8:1771305-1772279	H1-hESC	embryonic stem cell:	n/a	chr8:1771949-1771962 chr8:1771950-1771960 chr8:1771614-1771624 chr8:1771949-1771962 chr8:1771951-1771960 chr8:1771562-1771572 chr8:1771950-1771960 chr8:1771951-1771961 chr8:1771950-1771961 chr8:1771950-1771961 chr8:1771951-1771961 chr8:1771891-1771901 chr8:1771950-1771961 chr8:1771640-1771650
11	SP1	chr8:1771663-1772322	A549	lung:	n/a	chr8:1771785-1771794 chr8:1771783-1771795 chr8:1771784-1771793 chr8:1771866-1771878 chr8:1771866-1771878 chr8:1772088-1772102 chr8:1772017-1772038 chr8:1771785-1771794 chr8:1771780-1771794 chr8:1771867-1771876
12	TAF1	chr8:1771959-1772181	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr8:1771754-1772147	K562	blood:	n/a	n/a
14	POLR2A	chr8:1771607-1772187	H1-hESC	embryonic stem cell:	n/a	n/a
15	SP1	chr8:1771161-1772405	HCT-116	colon:	n/a	chr8:1771785-1771794 chr8:1771783-1771795 chr8:1771784-1771793 chr8:1771866-1771878 chr8:1771866-1771878 chr8:1772088-1772102 chr8:1771639-1771650 chr8:1772017-1772038 chr8:1771785-1771794 chr8:1771780-1771794 chr8:1771867-1771876
16	JUND	chr8:1771691-1772176	A549	lung:	n/a	n/a
17	CHD2	chr8:1771333-1772203	H1-hESC	embryonic stem cell:	n/a	chr8:1771616-1771626 chr8:1771785-1771795
18	MAZ	chr8:1771343-1772229	K562	blood:	n/a	chr8:1771949-1771962 chr8:1771950-1771960 chr8:1771614-1771624 chr8:1771949-1771962 chr8:1771951-1771960 chr8:1771562-1771572 chr8:1771950-1771960 chr8:1771951-1771961 chr8:1771950-1771961 chr8:1771950-1771961 chr8:1771951-1771961 chr8:1771891-1771901 chr8:1771950-1771961 chr8:1771640-1771650
19	YY1	chr8:1771809-1772130	K562	blood:	n/a	chr8:1771935-1771949 chr8:1771938-1771952
20	TAF1	chr8:1771635-1772510	ECC-1	luminal epithelium:	n/a	n/a
21	CBX3	chr8:1771711-1772165	K562	blood:	n/a	n/a
22	USF1	chr8:1771743-1772185	SK-N-SH	brain:	n/a	n/a
23	CREB1	chr8:1771616-1772282	H1-hESC	embryonic stem cell:	n/a	n/a
24	SP1	chr8:1771548-1772293	A549	lung:	n/a	chr8:1771785-1771794 chr8:1771783-1771795 chr8:1771784-1771793 chr8:1771866-1771878 chr8:1771866-1771878 chr8:1772088-1772102 chr8:1771639-1771650 chr8:1772017-1772038 chr8:1771785-1771794 chr8:1771780-1771794 chr8:1771867-1771876
25	EP300	chr8:1771491-1772392	ECC-1	luminal epithelium:	n/a	chr8:1772286-1772295
26	POLR2A	chr8:1771326-1772263	HUVEC	blood vessel:	n/a	n/a
27	POLR2A	chr8:1771426-1772160	K562	blood:	n/a	n/a
28	CHD2	chr8:1771333-1772575	Hela-S3	cervix:	n/a	chr8:1772438-1772448 chr8:1772508-1772518 chr8:1771616-1771626 chr8:1771785-1771795 chr8:1772352-1772362
29	SIN3AK20	chr8:1771910-1772130	SK-N-SH	brain:	n/a	n/a
30	IRF3	chr8:1771916-1772148	Hela-S3	cervix:	n/a	n/a
31	MAX	chr8:1771719-1772188	MCF-7	breast:	n/a	chr8:1771949-1771962 chr8:1771950-1771960 chr8:1771949-1771962 chr8:1771951-1771960 chr8:1771950-1771960 chr8:1771951-1771961 chr8:1771950-1771961 chr8:1771950-1771961 chr8:1771951-1771961 chr8:1771891-1771901 chr8:1771950-1771961
32	SMARCB1	chr8:1771336-1772660	Hela-S3	cervix:	n/a	n/a
33	MAX	chr8:1771185-1772290	H1-hESC	embryonic stem cell:	n/a	chr8:1771949-1771962 chr8:1771950-1771960 chr8:1771614-1771624 chr8:1771949-1771962 chr8:1771951-1771960 chr8:1771562-1771572 chr8:1771950-1771960 chr8:1771951-1771961 chr8:1771950-1771961 chr8:1771950-1771961 chr8:1771951-1771961 chr8:1771891-1771901 chr8:1771950-1771961 chr8:1771640-1771650
34	STAT3	chr8:1771812-1772166	MCF10A-Er-Src	breast:	n/a	chr8:1772089-1772101 chr8:1771993-1772004
35	HEY1	chr8:1771971-1772142	K562	blood:	n/a	n/a
36	PBX3	chr8:1771728-1772182	A549	lung:	n/a	chr8:1772004-1772024 chr8:1772019-1772028
37	POLR2A	chr8:1770733-1772156	MCF10A-Er-Src	breast:	n/a	n/a
38	GABPA	chr8:1771770-1772156	K562	blood:	n/a	chr8:1771971-1771985 chr8:1771901-1771910 chr8:1771784-1771793 chr8:1771899-1771910 chr8:1771899-1771913 chr8:1771938-1771947
39	ZBTB7A	chr8:1771371-1772183	K562	blood:	n/a	chr8:1771812-1771821 chr8:1771937-1771946 chr8:1771731-1771738 chr8:1771887-1771896
40	POLR2A	chr8:1771362-1772402	MCF-7	breast:	n/a	n/a
41	POLR2A	chr8:1771352-1772314	H1-neurons	neurons:	n/a	n/a
42	POLR2A	chr8:1771161-1772213	HUVEC	blood vessel:	n/a	n/a
43	MXI1	chr8:1771138-1772183	IMR90	lung:	n/a	chr8:1771950-1771959 chr8:1771952-1771961 chr8:1771950-1771959 chr8:1771952-1771961
44	MYC	chr8:1771811-1772124	MCF-7	breast:	n/a	chr8:1771949-1771962 chr8:1771950-1771960 chr8:1771949-1771962 chr8:1771951-1771960 chr8:1771950-1771960 chr8:1771951-1771961 chr8:1771950-1771961 chr8:1771950-1771961 chr8:1771951-1771961 chr8:1771891-1771901 chr8:1771950-1771961
45	FOXP2	chr8:1771309-1772192	PFSK-1	brain:	n/a	n/a
46	POLR2A	chr8:1771306-1772159	H1-hESC	embryonic stem cell:	n/a	n/a
47	TEAD4	chr8:1771716-1772186	A549	lung:	n/a	n/a
48	POLR2A	chr8:1771281-1772181	HCT-116	colon:	n/a	n/a
49	USF2	chr8:1771749-1772147	H1-hESC	embryonic stem cell:	n/a	chr8:1771949-1771960
50	MYC	chr8:1771835-1772125	MCF10A-Er-Src	breast:	n/a	chr8:1771949-1771962 chr8:1771950-1771960 chr8:1771949-1771962 chr8:1771951-1771960 chr8:1771950-1771960 chr8:1771951-1771961 chr8:1771950-1771961 chr8:1771950-1771961 chr8:1771951-1771961 chr8:1771891-1771901 chr8:1771950-1771961

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:1772080-1772130	HCF	heart:	n/a
2	chr8:1772080-1772130	HCT-116	colon:	n/a
3	chr8:1772080-1772130	RPTEC	kidney:	n/a
4	chr8:1772080-1772130	HL-60	blood:	n/a
5	chr8:1772080-1772130	NHBE	bronchial:	n/a
6	chr8:1772080-1772130	IMR90	lung:	fetal
7	chr8:1772080-1772130	A549	lung:	n/a
8	chr8:1772080-1772130	BE2_C	brain:	n/a
9	chr8:1772080-1772130	AG09319	gingival:	n/a
10	chr8:1772080-1772130	HEK293	kidney:	embryo
11	chr8:1772080-1772130	Caco-2	colon:	n/a
12	chr8:1772080-1772130	H1-hESC	embryonic stem cell:	embryo
13	chr8:1772080-1772130	GM06990	blood:	n/a
14	chr8:1772080-1772130	HNPCEpiC	eye:	n/a
15	chr8:1772080-1772130	NT2-D1	testis:	n/a
16	chr8:1772080-1772130	U87	brain:	n/a
17	chr8:1772080-1772130	AG10803	skin:	n/a
18	chr8:1772080-1772130	HRE	kidney:	n/a
19	chr8:1772080-1772130	AG04449	skin:	fetal
20	chr8:1772080-1772130	PrEC	prostate:	n/a
21	chr8:1772080-1772130	HIPEpiC	eye:	n/a
22	chr8:1772080-1772130	T-47D	breast:	n/a
23	chr8:1772080-1772130	MCF-7	breast:	n/a
24	chr8:1772080-1772130	GM12878	blood:	n/a
25	chr8:1772080-1772130	HCPEpiC	choroid plexus:	n/a
26	chr8:1772080-1772130	SK-N-SH	brain:	n/a
27	chr8:1772080-1772130	GM12892	blood:	n/a
28	chr8:1772080-1772130	PANC-1	pancreas:	n/a
29	chr8:1772080-1772130	Hela-S3	cervix:	n/a
30	chr8:1772080-1772130	HEEpiC	esophagus:	n/a
31	chr8:1772080-1772130	SK-N-SH_RA	brain:	n/a
32	chr8:1772080-1772130	BJ	skin:	n/a
33	chr8:1772080-1772130	NH-A	brain:	n/a
34	chr8:1772080-1772130	Jurkat	blood:	n/a
35	chr8:1772080-1772130	ProgFib	skin:	n/a
36	chr8:1772080-1772130	MCF10A-Er-Src	breast:	n/a
37	chr8:1772080-1772130	AG09309	skin:	n/a
38	chr8:1772080-1772130	ECC-1	luminal epithelium:	n/a
39	chr8:1772080-1772130	CMK	blood:	n/a
40	chr8:1772080-1772130	HCM	heart:	n/a
41	chr8:1772080-1772130	NB4	blood:	n/a
42	chr8:1772080-1772130	PFSK-1	brain:	n/a
43	chr8:1772080-1772130	HAEpiC	amniotic membrane:	n/a
44	chr8:1772080-1772130	AG04450	lung:	fetal
45	chr8:1772080-1772130	ovcar-3	ovarian:	n/a
46	chr8:1772080-1772130	LNCaP	prostate:	n/a
47	chr8:1772080-1772130	K562	blood:	n/a
48	chr8:1772080-1772130	HRCEpiC	kidney:	n/a
49	chr8:1772080-1772130	SAEC	small airway:	n/a
50	chr8:1772080-1772130	HPAEpiC	pulmonary alveolar:	n/a

No.	Distal block	Cell Line	Cell type
1	chr8:1708451..1710291-chr8:1769924..1772142,2	K562	blood:
2	chr8:1764550..1766629-chr8:1770415..1772487,2	K562	blood:
3	chr14:102430509..102431237-chr8:1771618..1772329,2	HCT-116	colon:

Variant related genes	Relation type
ARHGEF10	TF binding region
ARHGEF10	CpG island
ENSG00000207826	Chromatin interaction
ENSG00000197102	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889697	chr8:1238564-1861971	Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv889704	chr8:1563904-1965389	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv889707	chr8:1581839-1920461	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv889708	chr8:1581839-1965389	Genic enhancers Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv889709	chr8:1581839-1965389	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv889711	chr8:1591412-1904157	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv889714	chr8:1616718-1965389	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv1034490	chr8:1654716-1782467	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
10	nsv532892	chr8:1687433-1839578	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
11	nsv465276	chr8:1701432-1777571	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
12	nsv609530	chr8:1701432-1777571	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
13	nsv609531	chr8:1717036-1965389	Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
14	nsv824454	chr8:1740369-1802873	Genic enhancers Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
15	nsv1025444	chr8:1743663-1864809	Genic enhancers Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
16	nsv539299	chr8:1743663-1864809	Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
17	nsv470167	chr8:1746949-1886640	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
18	nsv465277	chr8:1746950-1888447	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
19	nsv609533	chr8:1746950-1888447	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
20	nsv889717	chr8:1746950-1924237	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
21	nsv889718	chr8:1748166-1807756	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
22	nsv1017597	chr8:1748941-1865887	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
23	nsv889720	chr8:1756800-1811397	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
24	nsv889721	chr8:1756800-1815639	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
25	nsv889722	chr8:1756800-1857293	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
26	nsv889723	chr8:1756800-1904157	Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
27	nsv889724	chr8:1756800-1965389	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
28	nsv1031464	chr8:1763119-1848596	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
29	nsv889725	chr8:1765371-1816527	Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
30	nsv824455	chr8:1767334-1772637	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
31	nsv889726	chr8:1768004-1798128	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
32	nsv889727	chr8:1768004-1815639	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
33	nsv889728	chr8:1768004-1850622	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
34	esv3374295	chr8:1770970-1774918	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
35	esv3323272	chr8:1771095-1774093	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
36	esv3506439	chr8:1771270-1774568	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
37	esv3506441	chr8:1771270-1774568	Active TSS Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1771000-1772600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr8:1771000-1772600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:1771000-1772600	Enhancers	Stomach Mucosa	stomach
4	chr8:1771000-1772800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:1771000-1772800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:1771000-1772800	Active TSS	Fetal Kidney	kidney
7	chr8:1771000-1772800	Active TSS	HMEC	breast
8	chr8:1771000-1774200	Active TSS	Aorta	Aorta
9	chr8:1771200-1772600	Bivalent/Poised TSS	Fetal Stomach	stomach
10	chr8:1771200-1772600	Active TSS	Stomach Smooth Muscle	stomach
11	chr8:1771200-1772800	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr8:1771200-1772800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr8:1771200-1772800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:1771200-1772800	Active TSS	Muscle Satellite Cultured Cells	--
15	chr8:1771200-1772800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:1771200-1772800	Active TSS	Brain Angular Gyrus	brain
17	chr8:1771200-1772800	Active TSS	Brain Cingulate Gyrus	brain
18	chr8:1771200-1772800	Active TSS	Brain Hippocampus Middle	brain
19	chr8:1771200-1772800	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr8:1771200-1772800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:1771200-1772800	Active TSS	Fetal Brain Female	brain
22	chr8:1771200-1772800	Active TSS	Fetal Muscle Leg	muscle
23	chr8:1771200-1772800	Active TSS	A549	lung
24	chr8:1771200-1772800	Active TSS	Hela-S3	cervix
25	chr8:1771200-1772800	Active TSS	K562	blood
26	chr8:1771200-1772800	Active TSS	NH-A	brain
27	chr8:1771200-1772800	Active TSS	NHDF-Ad	bronchial
28	chr8:1771200-1773000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:1771200-1773000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:1771200-1773000	Active TSS	Brain Germinal Matrix	brain
31	chr8:1771200-1773200	Active TSS	Ovary	ovary
32	chr8:1771200-1773600	Active TSS	H1 Cell Line	embryonic stem cell
33	chr8:1771200-1773600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:1771200-1773600	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr8:1771200-1773600	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr8:1771200-1774400	Active TSS	Right Atrium	heart
37	chr8:1771400-1772200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr8:1771400-1772400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr8:1771400-1772400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr8:1771400-1772400	Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr8:1771400-1772400	Active TSS	Adipose Nuclei	Adipose
42	chr8:1771400-1772600	Active TSS	Pancreas	Pancrea
43	chr8:1771400-1772600	Active TSS	Placenta Amnion	Placenta Amnion
44	chr8:1771400-1772800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr8:1771400-1772800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr8:1771400-1772800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:1771400-1772800	Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr8:1771400-1772800	Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr8:1771400-1772800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:1771400-1772800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links