Variant report
| Variant | rs56062444 |
|---|---|
| Chromosome Location | chr9:93150545-93150546 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:93140741..93143322-chr9:93148992..93151722,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs57374954 | 1.00[AMR][1000 genomes] |
| rs57876844 | 1.00[AMR][1000 genomes] |
| rs58550693 | 1.00[AMR][1000 genomes] |
| rs6479590 | 1.00[AMR][1000 genomes] |
| rs7044597 | 1.00[AMR][1000 genomes] |
| rs73489608 | 1.00[AMR][1000 genomes] |
| rs73489999 | 1.00[AMR][1000 genomes] |
| rs73491716 | 1.00[AMR][1000 genomes] |
| rs73491725 | 1.00[AMR][1000 genomes] |
| rs73501957 | 1.00[AMR][1000 genomes] |
| rs73506544 | 1.00[AMR][1000 genomes] |
| rs73507721 | 1.00[AMR][1000 genomes] |
| rs73507736 | 1.00[AMR][1000 genomes] |
| rs73507742 | 1.00[AMR][1000 genomes] |
| rs73650446 | 1.00[AMR][1000 genomes] |
| rs73650450 | 1.00[AMR][1000 genomes] |
| rs73650451 | 1.00[AMR][1000 genomes] |
| rs73650472 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041278 | chr9:92965701-93560454 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv528155 | chr9:93106543-93152717 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv482748 | chr9:93123377-93279526 | Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv893565 | chr9:93130796-93392332 | Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:93147400-93156000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
