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Variant report
Variant
rs560646438
Chromosome Location
chr6:29447754-29447755
allele
C/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:3)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
MAFK
chr6:29447539-29447864
HepG2
liver:
n/a
chr6:29447708-29447722
chr6:29447710-29447721
chr6:29447705-29447720
chr6:29447710-29447721
chr6:29447705-29447721
chr6:29447709-29447720
chr6:29447709-29447720
2
MAFF
chr6:29447569-29447855
HepG2
liver:
n/a
chr6:29447704-29447722
3
MAFK
chr6:29447541-29447826
HepG2
liver:
n/a
chr6:29447708-29447722
chr6:29447710-29447721
chr6:29447705-29447720
chr6:29447710-29447721
chr6:29447705-29447721
chr6:29447709-29447720
chr6:29447709-29447720
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr6:29430057..29432693-chr6:29447492..29449143,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
MAS1LP1
TF binding region
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
esv3424039
chr6:29439297-29504564
Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS
TF binding regionCpG islandChromatin interactive regionlncRNA
8 gene(s)
inside rSNPs
diseases
2
nsv883528
chr6:29447724-29494897
Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription
TF binding regionCpG islandChromatin interactive region
6 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links