Variant report

Variant	rs56067141
Chromosome Location	chr13:95071386-95071387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs35629935	1.00[ASN][1000 genomes]
rs35973409	1.00[ASN][1000 genomes]
rs41275882	1.00[ASN][1000 genomes]
rs41275884	1.00[ASN][1000 genomes]
rs41275888	1.00[ASN][1000 genomes]
rs55855830	1.00[ASN][1000 genomes]
rs55943196	1.00[ASN][1000 genomes]
rs56044117	1.00[ASN][1000 genomes]
rs56111318	1.00[ASN][1000 genomes]
rs56348714	1.00[ASN][1000 genomes]
rs56372959	1.00[ASN][1000 genomes]
rs59468724	1.00[ASN][1000 genomes]
rs61965578	1.00[ASN][1000 genomes]
rs73557817	1.00[ASN][1000 genomes]
rs9524468	1.00[ASN][1000 genomes]
rs9524470	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95056600-95072000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:95068800-95072200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:95069200-95071800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr13:95070600-95073000	Enhancers	Primary T cells from cord blood	blood
5	chr13:95070800-95072400	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr13:95070800-95072400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr13:95070800-95072800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:95070800-95072800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr13:95070800-95073800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr13:95071000-95071400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr13:95071000-95071600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr13:95071000-95072200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr13:95071000-95072400	Enhancers	Primary B cells from peripheral blood	blood
14	chr13:95071200-95072400	Enhancers	Osteobl	bone
15	chr13:95071200-95073000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr13:95071200-95073000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links