Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1028805	1.00[CHB][hapmap]
rs17196161	1.00[ASW][hapmap];0.85[TSI][hapmap]
rs28587431	1.00[AFR][1000 genomes]
rs2892681	1.00[CHB][hapmap]
rs35629935	1.00[ASN][1000 genomes]
rs35973409	1.00[ASN][1000 genomes]
rs41275872	0.86[EUR][1000 genomes]
rs41275882	1.00[ASN][1000 genomes]
rs41275884	1.00[ASN][1000 genomes]
rs41275888	1.00[ASN][1000 genomes]
rs4318084	1.00[CHB][hapmap]
rs4773798	1.00[CHB][hapmap]
rs55855830	1.00[ASN][1000 genomes]
rs55943196	1.00[ASN][1000 genomes]
rs56044117	1.00[ASN][1000 genomes]
rs56067141	1.00[ASN][1000 genomes]
rs56111318	1.00[ASN][1000 genomes]
rs56348714	1.00[ASN][1000 genomes]
rs56372959	1.00[ASN][1000 genomes]
rs59468724	1.00[ASN][1000 genomes]
rs72636619	1.00[AFR][1000 genomes]
rs7319696	1.00[CHB][hapmap]
rs73557817	1.00[ASN][1000 genomes]
rs9516401	1.00[ASW][hapmap];0.85[TSI][hapmap];1.00[AFR][1000 genomes]
rs9516403	0.85[TSI][hapmap]
rs9516405	1.00[AFR][1000 genomes]
rs9524451	1.00[AFR][1000 genomes]
rs9524453	1.00[AFR][1000 genomes]
rs9524454	1.00[AFR][1000 genomes]
rs9524456	1.00[AFR][1000 genomes]
rs9524460	1.00[ASW][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[AFR][1000 genomes]
rs9524462	1.00[AFR][1000 genomes]
rs9524467	1.00[AFR][1000 genomes]
rs9524468	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524469	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916640	chr13:94521959-95101443	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv533063	chr13:94560362-95101443	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv456077	chr13:94993032-95051560	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv562755	chr13:94993032-95051560	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9524470	DCT	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95024200-95035200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:95030000-95050000	Weak transcription	Ovary	ovary
3	chr13:95032200-95036400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr13:95033200-95035400	Weak transcription	Fetal Intestine Small	intestine
5	chr13:95033600-95034800	Enhancers	Fetal Stomach	stomach
6	chr13:95033600-95035200	Flanking Active TSS	Fetal Heart	heart
7	chr13:95033800-95036200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:95033800-95055400	Weak transcription	HSMMtube	muscle
9	chr13:95034400-95034800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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