Variant report

Variant	rs56072918
Chromosome Location	chr8:86209408-86209409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:86157807..86158310-chr8:86209318..86210236,2	K562	blood:
2	chr8:86209363..86209968-chr8:86283005..86283748,2	MCF-7	breast:
3	chr8:86209387..86210237-chr8:86999260..87000146,2	MCF-7	breast:
4	chr8:86209388..86210307-chr8:86375535..86376317,2	K562	blood:
5	chr8:86209220..86210007-chr8:87100560..87101317,2	MCF-7	breast:
6	chr8:86209311..86210290-chr8:86357968..86358764,3	MCF-7	breast:
7	chr8:86209343..86210253-chr8:87045503..87046009,2	K562	blood:
8	chr8:86209312..86210314-chr8:87045120..87046083,5	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000104267	Chromatin interaction
ENSG00000147614	Chromatin interaction
ENSG00000258256	Chromatin interaction
ENSG00000147613	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17741049	0.88[EUR][1000 genomes]
rs17813585	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4150895	0.84[AFR][1000 genomes]
rs4150896	0.84[AFR][1000 genomes]
rs4150921	0.87[AFR][1000 genomes]
rs55701281	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55702127	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56082812	0.87[AFR][1000 genomes]
rs56174027	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57271883	0.87[AFR][1000 genomes]
rs59170491	0.87[AFR][1000 genomes]
rs59712590	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60087251	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60789842	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6993321	0.82[EUR][1000 genomes]
rs73688688	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73688691	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73688699	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73688702	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1024759	chr8:86162507-86361533	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539659	chr8:86162507-86361533	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv971674	chr8:86187966-86338484	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv2761442	chr8:86201657-86230641	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86190200-86209600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:86190200-86209600	Weak transcription	Gastric	stomach
3	chr8:86197200-86211800	Weak transcription	Fetal Intestine Large	intestine
4	chr8:86197400-86225800	Weak transcription	Fetal Intestine Small	intestine
5	chr8:86208200-86209800	Enhancers	GM12878-XiMat	blood
6	chr8:86208800-86209600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:86208800-86209600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr8:86208800-86217200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links