Variant report

Variant	rs56077216
Chromosome Location	chr1:159052198-159052199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs41264141	0.82[EUR][1000 genomes]
rs41264447	0.82[EUR][1000 genomes]
rs55762293	0.82[EUR][1000 genomes]
rs55783705	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56046690	0.82[EUR][1000 genomes]
rs56387666	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56390355	0.82[EUR][1000 genomes]
rs62621173	0.82[EUR][1000 genomes]
rs72704986	0.82[AMR][1000 genomes]
rs72704995	0.82[AMR][1000 genomes]
rs72709516	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72709553	0.82[EUR][1000 genomes]
rs72709557	0.82[EUR][1000 genomes]
rs72709567	0.82[EUR][1000 genomes]
rs72709568	0.82[EUR][1000 genomes]
rs72709569	0.82[EUR][1000 genomes]
rs72709570	0.82[EUR][1000 genomes]
rs72709576	0.82[EUR][1000 genomes]
rs72709578	0.82[EUR][1000 genomes]
rs72709580	0.82[EUR][1000 genomes]
rs72709586	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72709587	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72709590	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72709591	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs855869	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159038600-159056400	Weak transcription	Spleen	Spleen
2	chr1:159048000-159053600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr1:159048200-159053600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:159048400-159052400	Weak transcription	Primary B cells from cord blood	blood
5	chr1:159049000-159052200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr1:159049600-159058000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:159051200-159063400	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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