Variant report

Variant	rs72709591
Chromosome Location	chr1:159063228-159063229
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159062221..159063748-chr1:159065497..159068342,2	K562	blood:
2	chr1:159057678..159060564-chr1:159061806..159064671,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs41264141	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs41264447	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55762293	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55783705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55940565	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56046690	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56077216	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56208680	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56387666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56390355	0.89[EUR][1000 genomes]
rs61533256	0.86[EUR][1000 genomes]
rs62621173	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs68180890	0.82[EUR][1000 genomes]
rs72704983	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72704986	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72704995	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72709516	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72709518	0.83[AMR][1000 genomes]
rs72709521	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709522	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709523	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709525	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709526	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709528	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709530	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709532	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709533	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709535	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709548	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709549	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72709553	0.89[EUR][1000 genomes]
rs72709557	0.89[EUR][1000 genomes]
rs72709567	0.89[EUR][1000 genomes]
rs72709568	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72709569	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72709570	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72709573	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72709576	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72709578	0.89[EUR][1000 genomes]
rs72709580	0.89[EUR][1000 genomes]
rs72709586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72709587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72709590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs855869	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872486	chr1:158979191-159090256	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159051200-159063400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:159056200-159063400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:159061800-159063400	Enhancers	Hela-S3	cervix
4	chr1:159061800-159063400	Enhancers	HMEC	breast
5	chr1:159062400-159064800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:159062600-159063400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:159062600-159064400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:159062600-159064600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:159062600-159064800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:159062600-159064800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:159062600-159064800	Weak transcription	NHDF-Ad	bronchial
12	chr1:159062600-159064800	Weak transcription	Osteobl	bone
13	chr1:159062600-159065000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:159062800-159065800	Weak transcription	HUVEC	blood vessel
15	chr1:159063200-159065200	Weak transcription	NHEK	skin

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