Variant report

Variant	rs56077929
Chromosome Location	chr10:112610355-112610356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112601392..112612171-chr10:112628692..112635814,14	MCF-7	breast:
2	chr10:112608440..112622028-chr10:112627331..112635995,26	MCF-7	breast:
3	chr10:112604597..112607623-chr10:112608052..112611214,4	K562	blood:
4	chr10:112603039..112604756-chr10:112609878..112611950,2	MCF-7	breast:
5	chr10:112604056..112607553-chr10:112607737..112614942,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150593	Chromatin interaction
ENSG00000232470	Chromatin interaction
ENSG00000203497	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17128067	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1885794	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9943402	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv467455	chr10:112579299-112612471	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv552172	chr10:112579299-112612471	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv896003	chr10:112579299-112631211	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv896002	chr10:112579299-112638028	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv527892	chr10:112607918-112610839	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112591400-112610600	Weak transcription	HSMMtube	muscle
2	chr10:112597000-112617200	Weak transcription	Psoas Muscle	Psoas
3	chr10:112597400-112614600	Weak transcription	Aorta	Aorta
4	chr10:112597800-112613400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:112597800-112617200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:112599600-112613000	Enhancers	Pancreas	Pancrea
7	chr10:112600600-112617200	Weak transcription	Right Ventricle	heart
8	chr10:112600800-112613000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:112602400-112620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:112605600-112617000	Weak transcription	Fetal Heart	heart
11	chr10:112607000-112612000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:112607200-112610600	Weak transcription	Colonic Mucosa	Colon
13	chr10:112607200-112610800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:112607200-112610800	Weak transcription	Fetal Lung	lung
15	chr10:112607200-112611000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:112607200-112611600	Weak transcription	Liver	Liver
17	chr10:112607200-112611800	Weak transcription	HepG2	liver
18	chr10:112607200-112612000	Weak transcription	Gastric	stomach
19	chr10:112607400-112610800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:112607400-112610800	Weak transcription	Stomach Mucosa	stomach
21	chr10:112607400-112611000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:112607400-112612000	Weak transcription	Left Ventricle	heart
23	chr10:112607600-112610800	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:112607600-112610800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:112607600-112611800	Weak transcription	Small Intestine	intestine
26	chr10:112607600-112612000	Weak transcription	Right Atrium	heart
27	chr10:112607600-112617000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr10:112608000-112610600	Weak transcription	Adipose Nuclei	Adipose
29	chr10:112608200-112610600	Weak transcription	Fetal Intestine Small	intestine
30	chr10:112608200-112611800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:112608200-112616000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr10:112608400-112611000	Weak transcription	Fetal Intestine Large	intestine
33	chr10:112608600-112612200	Enhancers	GM12878-XiMat	blood
34	chr10:112608800-112610400	Enhancers	Primary T cells from cord blood	blood
35	chr10:112608800-112616000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:112608800-112616000	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr10:112609000-112615000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr10:112609000-112616000	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr10:112609200-112612000	Enhancers	Esophagus	oesophagus
40	chr10:112609200-112612200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr10:112609200-112615400	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr10:112609200-112616000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr10:112609200-112616000	Enhancers	Placenta	Placenta
44	chr10:112609400-112610600	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr10:112609400-112610800	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr10:112609400-112611200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:112609400-112612400	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr10:112609400-112613000	Enhancers	Fetal Thymus	thymus
49	chr10:112609400-112613800	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr10:112609400-112613800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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