Variant report

Variant	rs56083998
Chromosome Location	chr8:124486753-124486754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124473077..124476850-chr8:124483961..124486847,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDYHV1-1	chr8:124480114-124488417	NONHSAT128554

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17330287	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3847178	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4460353	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55822628	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55896007	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59493118	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7008226	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124449600-124490800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:124451400-124489400	Weak transcription	Spleen	Spleen
3	chr8:124454000-124489400	Weak transcription	Gastric	stomach
4	chr8:124454600-124489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:124454600-124489200	Weak transcription	Brain Hippocampus Middle	brain
6	chr8:124461200-124490200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:124465600-124488800	Weak transcription	Primary T cells from cord blood	blood
8	chr8:124469000-124488800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:124469200-124488000	Weak transcription	Dnd41	blood
10	chr8:124474200-124489000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:124475200-124489400	Weak transcription	Fetal Intestine Small	intestine
12	chr8:124476800-124489200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:124478600-124489400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:124478600-124489400	Weak transcription	Left Ventricle	heart
15	chr8:124478800-124489600	Weak transcription	Ovary	ovary
16	chr8:124479000-124498400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:124479200-124489000	Weak transcription	Fetal Lung	lung
18	chr8:124479600-124489200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr8:124479600-124489400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:124479600-124499000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr8:124480000-124488000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr8:124480000-124489200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:124481400-124488800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:124481600-124488800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr8:124481600-124489000	Weak transcription	HMEC	breast
26	chr8:124481800-124489000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr8:124482400-124491400	Enhancers	HUVEC	blood vessel
28	chr8:124484200-124487000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr8:124484200-124488800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:124484400-124486800	Enhancers	Osteobl	bone
31	chr8:124484600-124488800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:124484600-124489000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr8:124484800-124487800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:124484800-124488000	Weak transcription	Adipose Nuclei	Adipose
35	chr8:124484800-124488800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:124484800-124499000	Weak transcription	Right Atrium	heart
37	chr8:124485000-124488800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:124485200-124489400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr8:124485200-124499000	Weak transcription	Psoas Muscle	Psoas
40	chr8:124485400-124488800	Weak transcription	HSMM	muscle
41	chr8:124485400-124488800	Weak transcription	HSMMtube	muscle
42	chr8:124485400-124489400	Weak transcription	Aorta	Aorta
43	chr8:124485800-124486800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr8:124485800-124486800	Enhancers	NHEK	skin
45	chr8:124485800-124514200	Weak transcription	Placenta	Placenta
46	chr8:124486000-124486800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr8:124486400-124486800	Enhancers	A549	lung
48	chr8:124486400-124486800	Enhancers	NH-A	brain
49	chr8:124486600-124486800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr8:124486600-124488800	Weak transcription	NHDF-Ad	bronchial

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