Variant report

Variant	rs56090763
Chromosome Location	chr2:144756077-144756078
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12612842	0.85[ASN][1000 genomes]
rs12618509	0.85[ASN][1000 genomes]
rs12619798	0.85[ASN][1000 genomes]
rs12621041	0.85[ASN][1000 genomes]
rs16823361	0.85[ASN][1000 genomes]
rs16823373	0.85[ASN][1000 genomes]
rs16823382	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1861878	0.87[ASN][1000 genomes]
rs1864245	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2111671	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28544584	0.83[ASN][1000 genomes]
rs28679451	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35790422	0.85[ASN][1000 genomes]
rs3755088	0.85[ASN][1000 genomes]
rs3820756	0.95[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs55634187	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56120346	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56123489	0.85[ASN][1000 genomes]
rs56136411	0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56166856	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58186643	0.85[ASN][1000 genomes]
rs60305932	0.85[ASN][1000 genomes]
rs61202373	0.85[ASN][1000 genomes]
rs72851896	0.85[ASN][1000 genomes]
rs72852907	0.85[ASN][1000 genomes]
rs72852908	0.85[ASN][1000 genomes]
rs72852911	0.85[ASN][1000 genomes]
rs72852913	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs72852918	0.85[ASN][1000 genomes]
rs72852924	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72852926	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72852929	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72852930	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72852932	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72852936	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72852938	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72852941	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72852947	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72852948	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72852967	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72852969	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72852982	0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72852985	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72852992	0.85[ASN][1000 genomes]
rs72852993	0.83[ASN][1000 genomes]
rs72852998	0.83[ASN][1000 genomes]
rs72852999	0.83[ASN][1000 genomes]
rs72853001	0.83[ASN][1000 genomes]
rs72854106	0.83[ASN][1000 genomes]
rs73962160	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7572132	0.85[ASN][1000 genomes]
rs9678811	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1006344	chr2:144657716-145334899	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv535951	chr2:144657716-145334899	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv532756	chr2:144746353-145315596	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144713600-144780000	Weak transcription	HSMMtube	muscle
2	chr2:144723000-144795600	Weak transcription	Primary T cells from cord blood	blood
3	chr2:144726200-144780800	Weak transcription	Primary B cells from cord blood	blood
4	chr2:144735800-144800400	Weak transcription	Ovary	ovary
5	chr2:144738200-144761200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:144746400-144773000	Weak transcription	Aorta	Aorta
7	chr2:144752200-144768800	Weak transcription	Adipose Nuclei	Adipose
8	chr2:144754000-144768000	Weak transcription	Psoas Muscle	Psoas
9	chr2:144754000-144778200	Weak transcription	Left Ventricle	heart
10	chr2:144754600-144768000	Weak transcription	Fetal Kidney	kidney
11	chr2:144755200-144761000	Weak transcription	Fetal Lung	lung
12	chr2:144755800-144761000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr2:144755800-144761200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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