Variant report

Variant	rs72852913
Chromosome Location	chr2:144723188-144723189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:144716711..144718634-chr2:144721830..144723917,3	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12612842	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12618509	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12619798	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12621041	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16823361	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16823373	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16823382	1.00[ASN][1000 genomes]
rs1861878	0.80[AFR][1000 genomes]
rs1864245	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2111671	0.99[ASN][1000 genomes]
rs28679451	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs35790422	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755088	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3820756	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs55634187	0.96[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs56090763	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56120346	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs56123489	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56136411	0.80[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56166856	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs56396630	0.89[AFR][1000 genomes]
rs58186643	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60305932	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61202373	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72851896	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852907	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852908	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852911	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852918	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852924	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72852926	0.88[ASN][1000 genomes]
rs72852929	0.88[ASN][1000 genomes]
rs72852930	0.88[ASN][1000 genomes]
rs72852932	0.88[ASN][1000 genomes]
rs72852936	0.88[ASN][1000 genomes]
rs72852938	0.88[ASN][1000 genomes]
rs72852941	0.88[ASN][1000 genomes]
rs72852947	0.96[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72852948	0.96[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72852967	0.86[ASN][1000 genomes]
rs72852969	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72852985	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72852992	0.80[AFR][1000 genomes]
rs73962140	0.89[AFR][1000 genomes]
rs73962146	0.92[AFR][1000 genomes]
rs73962150	0.89[AFR][1000 genomes]
rs73962160	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7572132	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs787170	0.89[ASN][1000 genomes]
rs9678811	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1006344	chr2:144657716-145334899	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv535951	chr2:144657716-145334899	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1067624	chr2:144657717-145425705	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv531413	chr2:144657717-145425705	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv962082	chr2:144718070-144728425	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144699600-144730400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:144704600-144728800	Weak transcription	Spleen	Spleen
3	chr2:144704800-144730800	Weak transcription	Left Ventricle	heart
4	chr2:144713600-144723400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:144713600-144780000	Weak transcription	HSMMtube	muscle
6	chr2:144713800-144725200	Weak transcription	Brain Hippocampus Middle	brain
7	chr2:144714800-144725000	Weak transcription	Psoas Muscle	Psoas
8	chr2:144718200-144732000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:144719000-144727400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:144720000-144723600	Weak transcription	Fetal Muscle Leg	muscle
11	chr2:144720200-144725400	Weak transcription	Primary B cells from cord blood	blood
12	chr2:144720400-144725800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:144721000-144724600	Enhancers	Fetal Lung	lung
14	chr2:144722200-144724800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:144722600-144724000	Weak transcription	Fetal Stomach	stomach
16	chr2:144722800-144723800	Enhancers	Liver	Liver
17	chr2:144723000-144795600	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links