Variant report

Variant	rs56094258
Chromosome Location	chr13:38548438-38548439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1556784	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1556785	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1591673	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1974265	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36011753	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55634752	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56346021	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61955037	0.80[EUR][1000 genomes]
rs7336536	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7985234	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7986382	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9532138	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9548130	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9548131	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9548132	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9576407	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9603292	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9603294	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38543200-38549200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr13:38544200-38550800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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