Variant report

Variant	rs1556784
Chromosome Location	chr13:38551758-38551759
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11839420	0.85[ASN][1000 genomes]
rs1556785	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1591673	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1974265	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1981172	0.82[AMR][1000 genomes]
rs2027247	0.85[ASN][1000 genomes]
rs2068891	0.84[ASN][1000 genomes]
rs36011753	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4943549	0.81[ASN][1000 genomes]
rs4943553	0.84[ASN][1000 genomes]
rs55634752	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56094258	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56346021	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61955037	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7326544	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7336536	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7985234	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7986382	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7996872	0.84[ASN][1000 genomes]
rs9532133	0.81[ASN][1000 genomes]
rs9532138	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9548105	0.81[ASN][1000 genomes]
rs9548106	0.81[ASN][1000 genomes]
rs9548113	0.83[ASN][1000 genomes]
rs9548118	0.83[ASN][1000 genomes]
rs9548130	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9548131	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9548132	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9576403	0.85[ASN][1000 genomes]
rs9576407	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9603292	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9603294	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38551400-38552000	Enhancers	Brain Substantia Nigra	brain
2	chr13:38551600-38552000	Enhancers	Brain Hippocampus Middle	brain

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