Variant report
Variant | rs7326544 |
---|---|
Chromosome Location | chr13:38579452-38579453 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1073835 | 0.89[ASN][1000 genomes] |
rs1360922 | 0.87[ASN][1000 genomes] |
rs1538154 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1556784 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs1556785 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs1974265 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs1981172 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs36011753 | 0.80[AMR][1000 genomes] |
rs4941883 | 0.80[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs55634752 | 0.80[AMR][1000 genomes] |
rs61956980 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs7334221 | 0.88[ASN][1000 genomes] |
rs7336735 | 0.88[ASN][1000 genomes] |
rs7985234 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs7986382 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs7994611 | 0.89[ASN][1000 genomes] |
rs863660 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9532138 | 0.81[AMR][1000 genomes] |
rs9548130 | 0.80[AMR][1000 genomes] |
rs9548131 | 0.80[AMR][1000 genomes] |
rs9548132 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs9548172 | 0.88[ASN][1000 genomes] |
rs9576407 | 0.80[AMR][1000 genomes] |
rs9576428 | 0.89[ASN][1000 genomes] |
rs9603292 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv915901 | chr13:38199035-39032633 | Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
2 | nsv899998 | chr13:38480878-38582178 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv869125 | chr13:38550449-39132813 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
4 | nsv949406 | chr13:38561474-39033484 | Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
5 | esv3410462 | chr13:38578002-38580200 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:38578000-38582600 | Weak transcription | Stomach Mucosa | stomach |