Variant report

Variant	rs56098354
Chromosome Location	chr14:55668170-55668171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr14:55667834-55668338	H1-hESC	embryonic stem cell:	n/a	n/a
2	TEAD4	chr14:55667917-55668436	H1-hESC	embryonic stem cell:	n/a	n/a
3	EP300	chr14:55667878-55668272	H1-hESC	embryonic stem cell:	n/a	n/a
4	TEAD4	chr14:55667852-55668419	H1-hESC	embryonic stem cell:	n/a	n/a
5	SP1	chr14:55667929-55668333	H1-hESC	embryonic stem cell:	n/a	n/a
6	TCF12	chr14:55667871-55668276	H1-hESC	embryonic stem cell:	n/a	n/a
7	SP1	chr14:55667831-55668329	H1-hESC	embryonic stem cell:	n/a	n/a
8	GABPA	chr14:55668011-55668248	H1-hESC	embryonic stem cell:	n/a	n/a
9	CREB1	chr14:55667992-55668295	H1-hESC	embryonic stem cell:	n/a	n/a
10	MAX	chr14:55668025-55668226	H1-hESC	embryonic stem cell:	n/a	n/a
11	YY1	chr14:55667831-55668280	H1-hESC	embryonic stem cell:	n/a	chr14:55668055-55668067
12	USF1	chr14:55668040-55668271	H1-hESC	embryonic stem cell:	n/a	n/a
13	HDAC2	chr14:55667906-55668269	H1-hESC	embryonic stem cell:	n/a	n/a
14	SRF	chr14:55668021-55668282	H1-hESC	embryonic stem cell:	n/a	n/a
15	YY1	chr14:55667846-55668325	H1-hESC	embryonic stem cell:	n/a	chr14:55668055-55668067
16	POLR2A	chr14:55667928-55668187	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr14:55667853-55668281	H1-hESC	embryonic stem cell:	n/a	n/a
18	CHD2	chr14:55667935-55668268	H1-hESC	embryonic stem cell:	n/a	n/a
19	NANOG	chr14:55668029-55668273	H1-hESC	embryonic stem cell:	n/a	n/a
20	TAF1	chr14:55667989-55668236	H1-hESC	embryonic stem cell:	n/a	n/a
21	ATF2	chr14:55667894-55668260	H1-hESC	embryonic stem cell:	n/a	n/a
22	JUND	chr14:55668134-55668214	H1-hESC	embryonic stem cell:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000258050	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17253702	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17672298	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57571649	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67588230	0.81[AFR][1000 genomes]
rs68153899	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68175860	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72715709	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73271727	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55662600-55671000	Weak transcription	Aorta	Aorta
2	chr14:55667200-55668200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr14:55667200-55668200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr14:55667200-55668800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr14:55667400-55668200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:55667400-55668200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr14:55667400-55668200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:55667400-55668200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr14:55667400-55668400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:55667400-55668800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr14:55667400-55669000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr14:55667600-55668200	Enhancers	Ovary	ovary
13	chr14:55667600-55668800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr14:55667600-55668800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr14:55667800-55669000	Enhancers	Fetal Intestine Small	intestine
16	chr14:55668000-55668400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:55668000-55668600	Active TSS	Duodenum Mucosa	Duodenum
18	chr14:55668000-55668800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr14:55668000-55668800	Enhancers	Fetal Heart	heart
20	chr14:55668000-55668800	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr14:55668000-55668800	Flanking Active TSS	HepG2	liver
22	chr14:55668000-55669000	Enhancers	Fetal Intestine Large	intestine

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