Variant report
| Variant | rs72715709 |
|---|---|
| Chromosome Location | chr14:55711692-55711693 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:55706022..55708410-chr14:55710949..55713300,2 | K562 | blood: | |
| 2 | chr14:55709704..55712679-chr14:55737747..55740445,2 | K562 | blood: | |
| 3 | chr14:55709259..55712260-chr14:55714004..55717778,3 | K562 | blood: | |
| 4 | chr14:55706701..55708410-chr14:55710949..55712624,2 | K562 | blood: | |
| 5 | chr14:55710760..55712909-chr14:55714004..55716438,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000178974 | Chromatin interaction |
| ENSG00000258413 | Chromatin interaction |
| ENSG00000271180 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs17672058 | 0.85[AFR][1000 genomes] |
| rs17672298 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17672364 | 0.89[AFR][1000 genomes] |
| rs2094436 | 0.83[AFR][1000 genomes] |
| rs2147970 | 0.83[AFR][1000 genomes] |
| rs2340936 | 0.83[AFR][1000 genomes] |
| rs3825614 | 0.87[AFR][1000 genomes] |
| rs4040064 | 0.85[AFR][1000 genomes] |
| rs56098354 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs57571649 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs58269011 | 0.85[AFR][1000 genomes] |
| rs66476033 | 0.83[AFR][1000 genomes] |
| rs67008693 | 0.89[AFR][1000 genomes] |
| rs67092614 | 0.85[AFR][1000 genomes] |
| rs67215571 | 0.85[AFR][1000 genomes] |
| rs67416413 | 0.89[AFR][1000 genomes] |
| rs67958555 | 0.83[AFR][1000 genomes] |
| rs68153899 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs68175860 | 0.83[ASN][1000 genomes] |
| rs72715746 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72715786 | 0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs8005117 | 0.89[AFR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
