Variant report

Variant	rs67958555
Chromosome Location	chr14:55670866-55670867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10129505	0.81[EUR][1000 genomes]
rs10137409	0.95[ASN][1000 genomes]
rs10139683	0.82[EUR][1000 genomes]
rs10140063	0.81[EUR][1000 genomes]
rs10140857	0.95[ASN][1000 genomes]
rs10142803	0.82[EUR][1000 genomes]
rs10143136	0.82[EUR][1000 genomes]
rs10146637	0.82[EUR][1000 genomes]
rs10149435	0.94[ASN][1000 genomes]
rs10438127	0.89[ASN][1000 genomes]
rs1047556	0.91[ASN][1000 genomes]
rs11158034	0.82[EUR][1000 genomes]
rs11621351	0.95[ASN][1000 genomes]
rs11622636	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622740	0.94[ASN][1000 genomes]
rs11848456	0.82[EUR][1000 genomes]
rs11848575	0.82[EUR][1000 genomes]
rs15870	0.95[ASN][1000 genomes]
rs17253695	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17672058	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17672364	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17740551	0.81[EUR][1000 genomes]
rs17832359	0.95[ASN][1000 genomes]
rs1815316	0.95[ASN][1000 genomes]
rs2075603	0.95[ASN][1000 genomes]
rs2094436	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147970	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147972	0.91[ASN][1000 genomes]
rs2182207	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2296489	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2340936	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2880103	0.82[EUR][1000 genomes]
rs35112084	0.81[EUR][1000 genomes]
rs3742566	0.90[ASN][1000 genomes]
rs3759667	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825613	0.91[ASN][1000 genomes]
rs3825614	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4040064	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4525413	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4580079	0.81[EUR][1000 genomes]
rs4644	0.95[ASN][1000 genomes]
rs55710823	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56166765	0.81[EUR][1000 genomes]
rs57033289	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57571649	0.83[AFR][1000 genomes]
rs57970196	0.91[ASN][1000 genomes]
rs58269011	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58458194	0.82[EUR][1000 genomes]
rs58553156	0.88[EUR][1000 genomes]
rs66464079	0.81[EUR][1000 genomes]
rs66476033	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66531545	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66782529	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66842809	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66871576	0.94[ASN][1000 genomes]
rs67008693	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67092614	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67098772	0.88[ASN][1000 genomes]
rs67215571	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67386901	0.82[EUR][1000 genomes]
rs67395212	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67416413	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67588230	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67756714	0.90[ASN][1000 genomes]
rs67805055	0.91[ASN][1000 genomes]
rs68083077	0.90[EUR][1000 genomes]
rs68138420	0.81[EUR][1000 genomes]
rs7140628	0.82[EUR][1000 genomes]
rs7140872	0.95[ASN][1000 genomes]
rs7147247	0.81[EUR][1000 genomes]
rs7155954	0.82[EUR][1000 genomes]
rs7157308	0.80[EUR][1000 genomes]
rs7159824	0.81[EUR][1000 genomes]
rs72715709	0.83[AFR][1000 genomes]
rs72718804	0.95[ASN][1000 genomes]
rs73263927	0.81[EUR][1000 genomes]
rs7493394	0.94[ASN][1000 genomes]
rs8005117	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55662600-55671000	Weak transcription	Aorta	Aorta
2	chr14:55669000-55674400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links