Variant report

Variant	rs55710823
Chromosome Location	chr14:55597371-55597372
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55368311..55371330-chr14:55594542..55598408,4	MCF-7	breast:
2	chr14:55516981..55523073-chr14:55594365..55600344,10	MCF-7	breast:
3	chr14:55595591..55597639-chr14:69257922..69259895,2	MCF-7	breast:
4	chr14:55587248..55591020-chr14:55595215..55599629,4	K562	blood:
5	chr14:55517037..55520851-chr14:55594266..55601656,13	MCF-7	breast:
6	chr14:55520859..55523802-chr14:55596862..55599089,2	MCF-7	breast:
7	chr14:55596607..55598705-chr14:55613153..55615282,2	MCF-7	breast:
8	chr14:55589520..55592355-chr14:55596993..55599725,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000131981	Chromatin interaction
ENSG00000168175	Chromatin interaction
ENSG00000131979	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10137409	0.93[ASN][1000 genomes]
rs10140857	0.93[ASN][1000 genomes]
rs10149435	0.92[ASN][1000 genomes]
rs10438127	0.86[ASN][1000 genomes]
rs1047556	0.98[ASN][1000 genomes]
rs11621351	0.93[ASN][1000 genomes]
rs11622636	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11622740	0.92[ASN][1000 genomes]
rs15870	0.93[ASN][1000 genomes]
rs17253695	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17672058	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17672364	0.81[EUR][1000 genomes]
rs17832359	0.93[ASN][1000 genomes]
rs1815316	0.93[ASN][1000 genomes]
rs2075603	0.93[ASN][1000 genomes]
rs2094436	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2147970	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2147972	0.98[ASN][1000 genomes]
rs2182207	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2296489	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2340936	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3742566	0.96[ASN][1000 genomes]
rs3759667	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3825613	0.98[ASN][1000 genomes]
rs4040064	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4525413	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4644	0.93[ASN][1000 genomes]
rs57033289	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57970196	0.98[ASN][1000 genomes]
rs58269011	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58553156	0.94[EUR][1000 genomes]
rs66476033	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66531545	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66782529	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66842809	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66871576	0.90[ASN][1000 genomes]
rs67008693	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67092614	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67098772	0.95[ASN][1000 genomes]
rs67215571	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67395212	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67416413	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67588230	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67756714	0.96[ASN][1000 genomes]
rs67805055	0.98[ASN][1000 genomes]
rs67958555	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68083077	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7140872	0.93[ASN][1000 genomes]
rs72718804	0.91[ASN][1000 genomes]
rs7493394	0.92[ASN][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55593200-55597800	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr14:55595200-55598400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:55595400-55597400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr14:55595400-55597400	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr14:55595400-55597600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:55595400-55597600	Active TSS	NHDF-Ad	bronchial
7	chr14:55595400-55597800	Active TSS	Muscle Satellite Cultured Cells	--
8	chr14:55595400-55606200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:55595600-55597400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:55595600-55597400	Active TSS	Brain Hippocampus Middle	brain
11	chr14:55595600-55597400	Active TSS	Pancreas	Pancrea
12	chr14:55595600-55597600	Active TSS	Stomach Mucosa	stomach
13	chr14:55595600-55597800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:55595600-55597800	Active TSS	Placenta Amnion	Placenta Amnion
15	chr14:55595600-55597800	Active TSS	Rectal Smooth Muscle	rectum
16	chr14:55595600-55597800	Active TSS	Right Atrium	heart
17	chr14:55595600-55598000	Active TSS	Lung	lung
18	chr14:55595600-55598000	Active TSS	HSMMtube	muscle
19	chr14:55595600-55598200	Active TSS	Left Ventricle	heart
20	chr14:55595600-55598200	Active TSS	Ovary	ovary
21	chr14:55595600-55598200	Active TSS	Small Intestine	intestine
22	chr14:55595600-55598400	Active TSS	Right Ventricle	heart
23	chr14:55595600-55598600	Active TSS	Esophagus	oesophagus
24	chr14:55595600-55598600	Active TSS	Psoas Muscle	Psoas
25	chr14:55595600-55599000	Active TSS	Colonic Mucosa	Colon
26	chr14:55595800-55597400	Active TSS	HSMM	muscle
27	chr14:55595800-55597600	Active TSS	Hela-S3	cervix
28	chr14:55595800-55597600	Active TSS	NHEK	skin
29	chr14:55595800-55597800	Active TSS	NHLF	lung
30	chr14:55596200-55599000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr14:55596200-55603200	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
32	chr14:55596400-55598000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:55596400-55599000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr14:55596400-55600000	Weak transcription	K562	blood
35	chr14:55596600-55597800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr14:55596600-55599200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr14:55596600-55606400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr14:55596800-55597400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:55596800-55597400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr14:55596800-55597400	Bivalent/Poised TSS	Thymus	Thymus
41	chr14:55596800-55597600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr14:55596800-55598200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr14:55596800-55598800	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
44	chr14:55596800-55600000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr14:55597000-55597400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr14:55597000-55597400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr14:55597000-55597800	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr14:55597000-55597800	Active TSS	Sigmoid Colon	Sigmoid Colon
49	chr14:55597000-55597800	Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr14:55597000-55613000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links