Variant report

Variant	rs17672364
Chromosome Location	chr14:55705904-55705905
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55705409..55707823-chr14:55736627..55738832,2	K562	blood:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10129505	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs10131562	0.91[CEU][hapmap]
rs10131730	0.96[CEU][hapmap]
rs10134317	0.96[CEU][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs10137409	0.81[ASN][1000 genomes]
rs10139683	0.92[EUR][1000 genomes]
rs10140063	0.91[EUR][1000 genomes]
rs10140857	0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10141396	0.96[CEU][hapmap];0.97[TSI][hapmap]
rs10142803	0.92[EUR][1000 genomes]
rs10143136	0.92[EUR][1000 genomes]
rs10146637	0.96[CEU][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs10149435	0.83[ASN][1000 genomes]
rs11158034	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs11621089	0.82[ASN][1000 genomes]
rs11621351	0.81[ASN][1000 genomes]
rs11622636	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11622740	0.86[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs11848456	0.92[EUR][1000 genomes]
rs11848575	0.92[EUR][1000 genomes]
rs11851870	0.90[JPT][hapmap];0.86[MKK][hapmap]
rs15870	0.81[ASN][1000 genomes]
rs17253695	0.96[CEU][hapmap];0.88[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap]
rs17253702	0.80[JPT][hapmap]
rs17672058	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17740551	0.91[EUR][1000 genomes]
rs17742719	0.90[JPT][hapmap]
rs17832359	0.81[ASN][1000 genomes]
rs1815316	0.81[ASN][1000 genomes]
rs1972221	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2026633	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2075603	0.93[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2094436	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2147970	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2182207	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2274273	0.93[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap]
rs2296489	0.96[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2340936	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2880103	0.92[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs35112084	0.89[EUR][1000 genomes]
rs3759667	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3783651	0.95[CEU][hapmap]
rs3825613	0.93[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap]
rs3825614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4040064	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4525413	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4580079	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs4644	0.93[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs55710823	0.81[EUR][1000 genomes]
rs56166765	0.90[EUR][1000 genomes]
rs57033289	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57571649	0.89[AFR][1000 genomes]
rs58269011	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58458194	0.92[EUR][1000 genomes]
rs66464079	0.91[EUR][1000 genomes]
rs66476033	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66531545	0.81[EUR][1000 genomes]
rs66551709	0.88[EUR][1000 genomes]
rs66782529	0.81[EUR][1000 genomes]
rs66842809	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66871576	0.83[ASN][1000 genomes]
rs67008693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67092614	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67215571	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67386901	0.92[EUR][1000 genomes]
rs67395212	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67416413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67588230	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67795323	0.88[EUR][1000 genomes]
rs67822108	0.86[EUR][1000 genomes]
rs67958555	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68138420	0.89[EUR][1000 genomes]
rs7140628	0.92[EUR][1000 genomes]
rs7140872	0.81[ASN][1000 genomes]
rs7147247	0.96[CEU][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs7150763	0.96[CEU][hapmap];0.97[TSI][hapmap]
rs7151581	0.96[CEU][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs7151754	0.89[EUR][1000 genomes]
rs7152390	0.95[CEU][hapmap]
rs7154796	0.89[EUR][1000 genomes]
rs7155954	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs7157308	0.90[EUR][1000 genomes]
rs7158791	0.92[CEU][hapmap]
rs7159824	0.96[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs72715709	0.89[AFR][1000 genomes]
rs72718804	0.81[ASN][1000 genomes]
rs73263927	0.89[EUR][1000 genomes]
rs7493394	0.83[ASN][1000 genomes]
rs8003279	0.86[CEU][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs8005117	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8005450	0.91[CEU][hapmap]
rs8014477	0.96[CEU][hapmap];0.97[TSI][hapmap]
rs8014540	0.96[CEU][hapmap]
rs8015211	0.96[CEU][hapmap];0.97[TSI][hapmap]
rs9323285	0.92[CEU][hapmap];0.97[TSI][hapmap]
rs9919932	0.91[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17672364	FBXO34	cis	cerebellum	SCAN
rs17672364	ATG14	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55705400-55706200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr14:55705800-55706800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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