Variant report

Variant	rs4644
Chromosome Location	chr14:55604935-55604936
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs1009977	0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs1009978	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs10134800	0.85[EUR][1000 genomes]
rs10137409	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140801	0.81[CEU][hapmap];0.87[TSI][hapmap]
rs10140857	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140869	0.85[CEU][hapmap]
rs10141552	0.87[TSI][hapmap]
rs10147667	0.96[CEU][hapmap];0.81[GIH][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs10149435	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10438127	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1047556	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1109170	0.82[TSI][hapmap]
rs11621351	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622636	0.93[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs11622740	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11625001	0.87[TSI][hapmap]
rs15870	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128183	0.86[EUR][1000 genomes]
rs17253695	0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs17253702	0.90[JPT][hapmap]
rs17672058	0.95[ASN][1000 genomes]
rs17672364	0.93[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs17740741	0.85[CEU][hapmap]
rs17832359	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1815316	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2075601	0.85[CEU][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs2075602	0.85[CEU][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs2075603	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2094102	0.95[EUR][1000 genomes]
rs2094436	0.95[ASN][1000 genomes]
rs2147970	0.95[ASN][1000 genomes]
rs2147972	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2182207	0.92[ASN][1000 genomes]
rs2274273	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap]
rs2296489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2340931	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs2340936	0.94[ASN][1000 genomes]
rs2341622	0.82[TSI][hapmap]
rs28429419	0.88[EUR][1000 genomes]
rs3742566	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3759667	0.93[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs3818451	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs3825613	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3825614	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs4040064	0.86[ASN][1000 genomes]
rs4525413	0.89[ASN][1000 genomes]
rs4652	0.84[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs55710823	0.93[ASN][1000 genomes]
rs56660630	0.84[EUR][1000 genomes]
rs57033289	0.98[ASN][1000 genomes]
rs57970196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58269011	0.86[ASN][1000 genomes]
rs61508494	0.95[EUR][1000 genomes]
rs6573005	0.95[EUR][1000 genomes]
rs6573006	0.95[EUR][1000 genomes]
rs6573007	0.90[EUR][1000 genomes]
rs6573009	0.85[TSI][hapmap]
rs6573013	0.82[TSI][hapmap]
rs6573014	0.82[TSI][hapmap]
rs66476033	0.95[ASN][1000 genomes]
rs66531545	0.90[ASN][1000 genomes]
rs66782529	0.93[ASN][1000 genomes]
rs66842809	0.95[ASN][1000 genomes]
rs66871576	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67008693	0.83[ASN][1000 genomes]
rs67092614	0.95[ASN][1000 genomes]
rs67098772	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67215571	0.95[ASN][1000 genomes]
rs67395212	0.92[ASN][1000 genomes]
rs67416413	0.83[ASN][1000 genomes]
rs67588230	0.95[ASN][1000 genomes]
rs67756714	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67805055	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67958555	0.95[ASN][1000 genomes]
rs7140872	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142704	0.93[EUR][1000 genomes]
rs7147106	0.82[EUR][1000 genomes]
rs7158768	0.82[TSI][hapmap]
rs7159808	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs7160110	0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs7160523	0.85[CEU][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs72718804	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7493394	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8004787	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs8007614	0.85[CEU][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs8007620	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs8007944	0.87[EUR][1000 genomes]
rs8009670	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs8011834	0.95[EUR][1000 genomes]
rs8013027	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs8018110	0.85[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4644	FBXO34	cis	cerebellum	SCAN
rs4644	RP11-665C16.6	cis	Muscle Skeletal	GTEx
rs4644	ATG14	cis	parietal	SCAN
rs4644	WDHD1	cis	parietal	SCAN

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55595400-55606200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:55596600-55606400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:55597000-55613000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:55597200-55605200	Weak transcription	A549	lung
5	chr14:55597200-55606600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr14:55597200-55607400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:55598400-55607600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:55598400-55613000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr14:55598600-55607800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr14:55598800-55605200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:55598800-55605800	Weak transcription	HepG2	liver
13	chr14:55598800-55606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:55598800-55606600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:55598800-55610800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr14:55598800-55611800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr14:55598800-55613000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr14:55599200-55605000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr14:55599200-55607600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:55599600-55606400	Weak transcription	Dnd41	blood
21	chr14:55600200-55605200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:55600200-55613200	Weak transcription	Psoas Muscle	Psoas
23	chr14:55600600-55611600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr14:55600800-55609400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr14:55601200-55605000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:55601600-55607000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr14:55601600-55610800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr14:55602000-55605000	Enhancers	Fetal Heart	heart
29	chr14:55602400-55605200	Enhancers	Small Intestine	intestine
30	chr14:55602600-55606000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
31	chr14:55602600-55606800	Genic enhancers	Stomach Mucosa	stomach
32	chr14:55602600-55613800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:55602800-55605000	Genic enhancers	Colonic Mucosa	Colon
34	chr14:55603000-55605000	Weak transcription	Thymus	Thymus
35	chr14:55603200-55607600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:55603200-55615400	Strong transcription	Hela-S3	cervix
37	chr14:55603600-55605200	Enhancers	Brain Angular Gyrus	brain
38	chr14:55603600-55605200	Enhancers	Spleen	Spleen
39	chr14:55603600-55606800	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr14:55604000-55605000	Genic enhancers	Fetal Stomach	stomach
41	chr14:55604000-55605000	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr14:55604000-55605200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr14:55604000-55606800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
45	chr14:55604200-55605000	Weak transcription	Placenta	Placenta
46	chr14:55604200-55605200	Weak transcription	Colon Smooth Muscle	Colon
47	chr14:55604200-55605200	Genic enhancers	Esophagus	oesophagus
48	chr14:55604200-55605200	Genic enhancers	Rectal Mucosa Donor 29	rectum
49	chr14:55604200-55605600	Strong transcription	Duodenum Mucosa	Duodenum
50	chr14:55604200-55605800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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