Variant report

Variant	rs10147667
Chromosome Location	chr14:55570849-55570850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55559803..55562181-chr14:55568621..55570852,2	K562	blood:
2	chr14:55568677..55571661-chr14:55571922..55577835,5	K562	blood:
3	chr14:55536490..55539101-chr14:55568903..55571706,2	K562	blood:
4	chr14:55568628..55573010-chr14:55614277..55618489,4	K562	blood:
5	chr14:55570137..55572731-chr14:55581864..55585022,3	MCF-7	breast:
6	chr14:55567648..55572808-chr14:55572945..55577245,19	MCF-7	breast:
7	chr14:55569932..55572391-chr14:55657772..55659443,2	K562	blood:
8	chr14:55568925..55571630-chr14:55613554..55616278,2	MCF-7	breast:
9	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
10	chr14:55517323..55520297-chr14:55568628..55571698,4	K562	blood:
11	chr14:55570108..55572293-chr14:55641654..55643309,2	K562	blood:
12	chr14:55569822..55570936-chr14:55588765..55589799,3	MCF-7	breast:
13	chr14:55516736..55518546-chr14:55570715..55573579,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168175	Chromatin interaction
ENSG00000126787	Chromatin interaction
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1009977	0.96[CEU][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs1009978	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10134800	0.83[EUR][1000 genomes]
rs10137409	0.93[EUR][1000 genomes]
rs10140801	0.88[CEU][hapmap]
rs10140857	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs10141552	0.81[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs10149435	0.92[EUR][1000 genomes]
rs10438127	0.93[EUR][1000 genomes]
rs10467798	0.81[CEU][hapmap]
rs1047556	0.93[EUR][1000 genomes]
rs11621351	0.93[EUR][1000 genomes]
rs11622740	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs11625001	0.85[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs15870	0.93[EUR][1000 genomes]
rs17128183	0.88[EUR][1000 genomes]
rs17740741	0.92[CEU][hapmap]
rs17832359	0.93[EUR][1000 genomes]
rs1815316	0.93[EUR][1000 genomes]
rs2075601	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs2075602	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs2075603	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs2094102	0.89[EUR][1000 genomes]
rs2147972	0.93[EUR][1000 genomes]
rs2274273	0.96[CEU][hapmap];0.89[TSI][hapmap]
rs2340931	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2341621	0.81[CEU][hapmap]
rs28429419	0.90[EUR][1000 genomes]
rs3818451	0.89[CEU][hapmap]
rs3825613	0.96[CEU][hapmap];0.81[GIH][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes]
rs4644	0.96[CEU][hapmap];0.81[GIH][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs4652	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs56660630	0.81[EUR][1000 genomes]
rs57970196	0.93[EUR][1000 genomes]
rs58553156	0.87[ASN][1000 genomes]
rs60972460	0.85[EUR][1000 genomes]
rs61508494	0.89[EUR][1000 genomes]
rs6573005	0.89[EUR][1000 genomes]
rs6573006	0.89[EUR][1000 genomes]
rs6573007	0.87[EUR][1000 genomes]
rs6573009	0.85[CEU][hapmap]
rs6573013	0.81[CEU][hapmap]
rs6573014	0.81[CEU][hapmap]
rs66871576	0.93[EUR][1000 genomes]
rs67098772	0.93[EUR][1000 genomes]
rs67756714	0.93[EUR][1000 genomes]
rs67805055	0.93[EUR][1000 genomes]
rs7140872	0.93[EUR][1000 genomes]
rs7142704	0.87[EUR][1000 genomes]
rs7158768	0.85[CEU][hapmap]
rs7159808	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7160110	0.96[CEU][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs7160523	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs72718804	0.91[EUR][1000 genomes]
rs7493394	0.93[EUR][1000 genomes]
rs8004787	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs8007614	0.92[CEU][hapmap];0.91[CHB][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8007620	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8007944	0.89[EUR][1000 genomes]
rs8009670	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs8011834	0.89[EUR][1000 genomes]
rs8013027	0.92[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8018110	0.83[EUR][1000 genomes]
rs8021583	0.85[CEU][hapmap]
rs8023197	0.85[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10147667	FBXO34	cis	multi-tissue	Pritchard

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55566600-55571600	Enhancers	Left Ventricle	heart
2	chr14:55566600-55571600	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr14:55566600-55571800	Enhancers	Small Intestine	intestine
4	chr14:55567200-55571400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr14:55567600-55571600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:55567800-55571000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr14:55567800-55571000	Enhancers	Pancreas	Pancrea
8	chr14:55567800-55571600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:55568000-55572200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr14:55568400-55571000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:55568400-55571200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:55568400-55571600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:55568400-55571600	Enhancers	Right Atrium	heart
14	chr14:55568600-55571000	Enhancers	Fetal Stomach	stomach
15	chr14:55568600-55571000	Enhancers	Psoas Muscle	Psoas
16	chr14:55568600-55571200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr14:55568600-55571200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr14:55568600-55571200	Enhancers	Fetal Heart	heart
19	chr14:55568600-55571400	Enhancers	Primary B cells from peripheral blood	blood
20	chr14:55568600-55571400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr14:55568600-55571400	Enhancers	Brain Hippocampus Middle	brain
22	chr14:55568600-55571600	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr14:55568600-55571600	Enhancers	Placenta	Placenta
24	chr14:55568600-55571600	Enhancers	Fetal Thymus	thymus
25	chr14:55568600-55571600	Enhancers	Placenta Amnion	Placenta Amnion
26	chr14:55568600-55571600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
27	chr14:55568600-55571600	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr14:55568600-55571600	Enhancers	Spleen	Spleen
29	chr14:55568600-55576000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr14:55568600-55576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr14:55568800-55571000	Enhancers	H1 Cell Line	embryonic stem cell
32	chr14:55568800-55571000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr14:55568800-55571000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr14:55568800-55571000	Enhancers	Thymus	Thymus
35	chr14:55568800-55571200	Enhancers	Primary B cells from cord blood	blood
36	chr14:55568800-55571200	Enhancers	Primary hematopoietic stem cells	blood
37	chr14:55568800-55571400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr14:55569000-55571000	Enhancers	H9 Cell Line	embryonic stem cell
39	chr14:55569000-55571000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr14:55569000-55571000	Enhancers	Fetal Kidney	kidney
41	chr14:55569000-55571200	Enhancers	Brain Anterior Caudate	brain
42	chr14:55569000-55571200	Enhancers	Right Ventricle	heart
43	chr14:55569200-55571600	Flanking Active TSS	GM12878-XiMat	blood
44	chr14:55569200-55572800	Weak transcription	Ovary	ovary
45	chr14:55569200-55574800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:55569200-55574800	Weak transcription	Gastric	stomach
47	chr14:55569600-55571400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr14:55569600-55571600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr14:55569800-55571000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr14:55569800-55571000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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