Variant report

Variant	rs8013027
Chromosome Location	chr14:55610940-55610941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55594129..55597123-chr14:55609218..55612175,4	MCF-7	breast:
2	chr14:55608162..55610995-chr14:55649616..55651209,2	K562	blood:
3	chr14:55556255..55556941-chr14:55610658..55611616,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1009977	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs1009978	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs10129505	0.86[JPT][hapmap]
rs10134317	0.86[JPT][hapmap]
rs10134800	0.88[EUR][1000 genomes]
rs10137409	0.97[EUR][1000 genomes]
rs10140801	0.81[CEU][hapmap]
rs10140857	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs10140869	0.86[CEU][hapmap];0.87[JPT][hapmap]
rs10141552	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs10146637	0.86[JPT][hapmap]
rs10147667	0.92[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10149435	0.97[EUR][1000 genomes]
rs10438127	0.98[EUR][1000 genomes]
rs10467798	0.82[CEU][hapmap]
rs1047556	0.97[EUR][1000 genomes]
rs1109170	0.85[CEU][hapmap]
rs11158034	0.86[JPT][hapmap]
rs11621351	0.98[EUR][1000 genomes]
rs11622740	0.89[CEU][hapmap];0.97[EUR][1000 genomes]
rs11625001	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs11625968	0.84[CEU][hapmap]
rs11628437	0.85[CEU][hapmap];0.87[JPT][hapmap]
rs15870	0.97[EUR][1000 genomes]
rs17128183	0.88[EUR][1000 genomes]
rs17740741	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs17741542	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs17832359	0.98[EUR][1000 genomes]
rs1815316	0.97[EUR][1000 genomes]
rs1972221	0.86[JPT][hapmap]
rs2026633	0.86[JPT][hapmap]
rs2075601	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs2075602	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs2075603	0.89[CEU][hapmap];0.98[EUR][1000 genomes]
rs2094102	0.94[EUR][1000 genomes]
rs2147972	0.98[EUR][1000 genomes]
rs2274273	0.88[CEU][hapmap]
rs2340931	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.96[EUR][1000 genomes]
rs2341621	0.82[CEU][hapmap]
rs28429419	0.90[EUR][1000 genomes]
rs2880103	0.81[JPT][hapmap]
rs3818451	0.89[CEU][hapmap];0.87[CHB][hapmap];0.84[EUR][1000 genomes]
rs3825613	0.88[CEU][hapmap];0.98[EUR][1000 genomes]
rs4644	0.85[CEU][hapmap];0.97[EUR][1000 genomes]
rs4652	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs56660630	0.87[EUR][1000 genomes]
rs57970196	0.98[EUR][1000 genomes]
rs58553156	0.89[ASN][1000 genomes]
rs60972460	0.80[EUR][1000 genomes]
rs61508494	0.94[EUR][1000 genomes]
rs6573005	0.94[EUR][1000 genomes]
rs6573006	0.94[EUR][1000 genomes]
rs6573007	0.93[EUR][1000 genomes]
rs6573009	0.85[CEU][hapmap]
rs6573013	0.81[CEU][hapmap]
rs6573014	0.81[CEU][hapmap]
rs6573017	0.86[CEU][hapmap]
rs66871576	0.98[EUR][1000 genomes]
rs67098772	0.98[EUR][1000 genomes]
rs67756714	0.98[EUR][1000 genomes]
rs67805055	0.98[EUR][1000 genomes]
rs7140872	0.97[EUR][1000 genomes]
rs7142704	0.92[EUR][1000 genomes]
rs7147106	0.83[EUR][1000 genomes]
rs7147247	0.86[JPT][hapmap]
rs7151581	0.86[JPT][hapmap]
rs7154889	0.86[CEU][hapmap]
rs7155954	0.86[JPT][hapmap]
rs7158768	0.85[CEU][hapmap]
rs7159808	0.93[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7159824	0.86[JPT][hapmap]
rs7160110	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs7160523	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs72718804	0.96[EUR][1000 genomes]
rs7493394	0.97[EUR][1000 genomes]
rs8004787	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs8005450	0.86[JPT][hapmap]
rs8007614	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8007620	0.93[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8007944	0.89[EUR][1000 genomes]
rs8009670	0.93[CEU][hapmap];0.90[EUR][1000 genomes]
rs8011834	0.94[EUR][1000 genomes]
rs8018110	0.88[EUR][1000 genomes]
rs8021583	0.86[CEU][hapmap];0.86[JPT][hapmap]
rs8023197	0.86[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8013027	RP11-665C16.6	cis	Muscle Skeletal	GTEx

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55597000-55613000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:55598400-55613000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:55598800-55611800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr14:55598800-55613000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:55600200-55613200	Weak transcription	Psoas Muscle	Psoas
7	chr14:55600600-55611600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:55602600-55613800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:55603200-55615400	Strong transcription	Hela-S3	cervix
10	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
11	chr14:55604200-55613000	Weak transcription	Liver	Liver
12	chr14:55604400-55611800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:55604400-55615600	Strong transcription	HSMM	muscle
14	chr14:55604400-55615800	Strong transcription	Muscle Satellite Cultured Cells	--
15	chr14:55604400-55620800	Weak transcription	K562	blood
16	chr14:55604600-55611000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:55604600-55613400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:55604600-55613400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:55604600-55615200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr14:55604600-55615400	Strong transcription	NHEK	skin
21	chr14:55604600-55627800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr14:55604800-55614800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr14:55604800-55616200	Strong transcription	HMEC	breast
24	chr14:55604800-55623200	Weak transcription	Brain Germinal Matrix	brain
25	chr14:55605000-55611800	Strong transcription	Colonic Mucosa	Colon
26	chr14:55605000-55612000	Strong transcription	HSMMtube	muscle
27	chr14:55605000-55613400	Strong transcription	Placenta	Placenta
28	chr14:55605000-55614200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr14:55605000-55614200	Strong transcription	Thymus	Thymus
30	chr14:55605000-55614600	Strong transcription	NHDF-Ad	bronchial
31	chr14:55605000-55614800	Strong transcription	NH-A	brain
32	chr14:55605000-55616600	Strong transcription	Osteobl	bone
33	chr14:55605000-55627600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:55605200-55612000	Strong transcription	Lung	lung
35	chr14:55605200-55612000	Strong transcription	Ovary	ovary
36	chr14:55605200-55613000	Weak transcription	Brain Hippocampus Middle	brain
37	chr14:55605200-55614000	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr14:55605200-55614000	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr14:55605200-55614000	Strong transcription	NHLF	lung
40	chr14:55605200-55614400	Strong transcription	Fetal Muscle Trunk	muscle
41	chr14:55605200-55614600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr14:55605400-55612400	Weak transcription	Brain Substantia Nigra	brain
44	chr14:55605400-55614000	Strong transcription	Rectal Smooth Muscle	rectum
45	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
46	chr14:55605800-55611000	Strong transcription	Fetal Heart	heart
47	chr14:55605800-55615200	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr14:55606000-55613400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:55606000-55613400	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr14:55606000-55613600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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