Variant report

Variant	rs56660630
Chromosome Location	chr14:55629128-55629129
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1009977	0.88[EUR][1000 genomes]
rs1009978	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10131926	0.82[AMR][1000 genomes]
rs10134800	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10137409	0.85[EUR][1000 genomes]
rs10147667	0.81[EUR][1000 genomes]
rs10149435	0.85[EUR][1000 genomes]
rs10438127	0.85[EUR][1000 genomes]
rs1047556	0.85[EUR][1000 genomes]
rs11621351	0.85[EUR][1000 genomes]
rs11622740	0.85[EUR][1000 genomes]
rs15870	0.85[EUR][1000 genomes]
rs17128183	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17832359	0.85[EUR][1000 genomes]
rs1815316	0.85[EUR][1000 genomes]
rs1952087	0.82[ASN][1000 genomes]
rs2075601	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2075602	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2075603	0.85[EUR][1000 genomes]
rs2094102	0.88[EUR][1000 genomes]
rs2147972	0.85[EUR][1000 genomes]
rs2340931	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28429419	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3818451	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3825613	0.85[EUR][1000 genomes]
rs4644	0.84[EUR][1000 genomes]
rs4652	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57970196	0.85[EUR][1000 genomes]
rs60972460	0.83[EUR][1000 genomes]
rs61508494	0.88[EUR][1000 genomes]
rs6573005	0.88[EUR][1000 genomes]
rs6573006	0.88[EUR][1000 genomes]
rs6573007	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573009	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs66871576	0.85[EUR][1000 genomes]
rs67098772	0.85[EUR][1000 genomes]
rs67756714	0.85[EUR][1000 genomes]
rs67805055	0.85[EUR][1000 genomes]
rs7140872	0.85[EUR][1000 genomes]
rs7142704	0.88[EUR][1000 genomes]
rs7142857	0.82[AMR][1000 genomes]
rs7144292	0.82[AMR][1000 genomes]
rs7147106	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7159808	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160110	0.88[EUR][1000 genomes]
rs7160523	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72718804	0.85[EUR][1000 genomes]
rs7493394	0.85[EUR][1000 genomes]
rs8004787	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8007614	0.86[EUR][1000 genomes]
rs8007620	0.86[EUR][1000 genomes]
rs8007944	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8009670	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8011834	0.88[EUR][1000 genomes]
rs8013027	0.87[EUR][1000 genomes]
rs8018110	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56660630	RP11-665C16.6	cis	Muscle Skeletal	GTEx

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55604000-55636400	Strong transcription	Fetal Thymus	thymus
3	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
5	chr14:55606600-55656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:55607000-55656000	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:55607200-55652200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:55607600-55651800	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr14:55607600-55655200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr14:55610600-55651600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:55610600-55655400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:55610600-55655600	Strong transcription	Dnd41	blood
13	chr14:55610800-55656000	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr14:55611000-55656000	Weak transcription	Fetal Heart	heart
15	chr14:55611200-55643400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:55611400-55630200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:55611600-55630000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:55611600-55656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:55612400-55637400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr14:55613400-55639200	Weak transcription	Fetal Intestine Small	intestine
21	chr14:55613400-55657800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:55614200-55633600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr14:55614800-55630400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr14:55617000-55630200	Weak transcription	Osteobl	bone
25	chr14:55619200-55631200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr14:55619200-55646800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr14:55619400-55634000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr14:55619600-55630800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr14:55619600-55643800	Weak transcription	NHDF-Ad	bronchial
30	chr14:55619800-55647400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:55621000-55633200	Weak transcription	Fetal Stomach	stomach
32	chr14:55621400-55643800	Weak transcription	NH-A	brain
33	chr14:55621600-55630200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:55621600-55630200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr14:55621600-55634400	Weak transcription	K562	blood
36	chr14:55621600-55634600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:55621800-55630200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:55621800-55630200	Weak transcription	Fetal Lung	lung
39	chr14:55621800-55632000	Weak transcription	NHLF	lung
40	chr14:55621800-55646200	Weak transcription	NHEK	skin
41	chr14:55622600-55649000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr14:55623400-55630000	Weak transcription	HMEC	breast
43	chr14:55623400-55630200	Weak transcription	Thymus	Thymus
44	chr14:55623400-55633200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr14:55623600-55630200	Weak transcription	HSMM	muscle
46	chr14:55623600-55657000	Weak transcription	Fetal Muscle Leg	muscle
47	chr14:55624000-55637800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr14:55624800-55644200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr14:55625000-55630400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:55625000-55638000	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links