Variant report

Variant	rs7144292
Chromosome Location	chr14:55713445-55713446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55712418..55714236-chr14:55736769..55739672,2	MCF-7	breast:
2	chr14:55712626..55715318-chr14:55876588..55879514,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction
ENSG00000126775	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1009978	0.82[AMR][1000 genomes]
rs10131913	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10131926	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10134800	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10139083	0.85[EUR][1000 genomes]
rs10139337	0.84[EUR][1000 genomes]
rs10139678	0.84[EUR][1000 genomes]
rs10140801	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10141483	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10141552	0.87[EUR][1000 genomes]
rs10142547	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10142823	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10144345	0.81[AMR][1000 genomes]
rs10145203	0.83[EUR][1000 genomes]
rs10149420	0.82[AMR][1000 genomes]
rs10150699	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10467798	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1109170	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11547116	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11625001	0.87[EUR][1000 genomes]
rs11625423	0.82[EUR][1000 genomes]
rs11628437	0.83[EUR][1000 genomes]
rs12050099	0.83[EUR][1000 genomes]
rs13379169	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17128183	0.84[AMR][1000 genomes]
rs17740741	0.83[EUR][1000 genomes]
rs1815581	0.82[AMR][1000 genomes]
rs1952087	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2075601	0.89[AMR][1000 genomes]
rs2075602	0.89[AMR][1000 genomes]
rs2340931	0.84[AMR][1000 genomes]
rs2341621	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2341622	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28429419	0.84[AMR][1000 genomes]
rs28568813	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28631821	0.81[AMR][1000 genomes]
rs3783650	0.81[AMR][1000 genomes]
rs3818451	0.86[AMR][1000 genomes]
rs3825616	0.82[AMR][1000 genomes]
rs4366639	0.82[EUR][1000 genomes]
rs4496026	0.82[EUR][1000 genomes]
rs4519260	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4597235	0.82[AMR][1000 genomes]
rs4652	0.83[AMR][1000 genomes]
rs56660630	0.82[AMR][1000 genomes]
rs56949365	0.82[EUR][1000 genomes]
rs58260073	0.86[EUR][1000 genomes]
rs59629906	0.84[EUR][1000 genomes]
rs59871474	0.84[EUR][1000 genomes]
rs60248556	0.86[EUR][1000 genomes]
rs61210954	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6573007	0.86[AMR][1000 genomes]
rs6573009	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6573010	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573012	0.85[AMR][1000 genomes]
rs6573014	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66696758	0.86[EUR][1000 genomes]
rs67514154	0.85[EUR][1000 genomes]
rs68046603	0.84[EUR][1000 genomes]
rs7142857	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7146748	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7146752	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7147106	0.87[AMR][1000 genomes]
rs7148171	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7153612	0.83[EUR][1000 genomes]
rs7153645	0.86[EUR][1000 genomes]
rs7158768	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7159808	0.89[AMR][1000 genomes]
rs7160523	0.87[AMR][1000 genomes]
rs72715769	0.87[EUR][1000 genomes]
rs8004787	0.89[AMR][1000 genomes]
rs8007944	0.84[AMR][1000 genomes]
rs8009670	0.84[AMR][1000 genomes]
rs8011288	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8018110	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8021583	0.87[EUR][1000 genomes]
rs8022225	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9323284	0.81[AMR][1000 genomes]
rs943590	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs946059	0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7144292	RP11-665C16.6	cis	Muscle Skeletal	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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