Variant report

Variant	rs8007944
Chromosome Location	chr14:55576816-55576817
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55568677..55571661-chr14:55571922..55577835,5	K562	blood:
2	chr14:55567648..55572808-chr14:55572945..55577245,19	MCF-7	breast:
3	chr14:55574863..55577240-chr14:55578769..55582897,4	K562	blood:
4	chr14:55572892..55577828-chr14:55580219..55584664,6	K562	blood:

Extended variants
information (count: 76 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1009977	0.89[CEU][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs1009978	0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10131926	0.84[AMR][1000 genomes]
rs10134800	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10137409	0.89[EUR][1000 genomes]
rs10140801	0.81[CEU][hapmap];0.91[MEX][hapmap];0.90[TSI][hapmap]
rs10140857	0.85[CEU][hapmap]
rs10141552	0.89[CEU][hapmap];0.85[TSI][hapmap]
rs10147667	0.92[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes]
rs10149435	0.88[EUR][1000 genomes]
rs10150699	0.80[AMR][1000 genomes]
rs10438127	0.88[EUR][1000 genomes]
rs10467798	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs1047556	0.89[EUR][1000 genomes]
rs11621351	0.88[EUR][1000 genomes]
rs11622740	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs11625001	0.92[CEU][hapmap];0.85[TSI][hapmap]
rs11628437	0.92[CEU][hapmap]
rs15870	0.89[EUR][1000 genomes]
rs17128183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17740741	0.85[CEU][hapmap]
rs17832359	0.88[EUR][1000 genomes]
rs1815316	0.89[EUR][1000 genomes]
rs1952087	0.81[AMR][1000 genomes]
rs2075601	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2075602	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2075603	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs2094102	0.92[EUR][1000 genomes]
rs2147964	1.00[YRI][hapmap]
rs2147972	0.88[EUR][1000 genomes]
rs2274273	0.89[CEU][hapmap];0.90[TSI][hapmap]
rs2340921	1.00[YRI][hapmap]
rs2340931	0.92[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2341621	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs2341622	0.85[CEU][hapmap];0.85[GIH][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs28429419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3818451	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3825613	0.89[CEU][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs4644	0.85[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs4652	0.96[CEU][hapmap];0.91[CHB][hapmap];0.98[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56660630	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57970196	0.88[EUR][1000 genomes]
rs60972460	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61508494	0.91[EUR][1000 genomes]
rs6573005	0.92[EUR][1000 genomes]
rs6573006	0.92[EUR][1000 genomes]
rs6573007	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6573009	0.92[CEU][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs6573010	0.81[AMR][1000 genomes]
rs6573013	0.89[CEU][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs6573014	0.89[CEU][hapmap];0.87[GIH][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap]
rs66871576	0.88[EUR][1000 genomes]
rs67098772	0.88[EUR][1000 genomes]
rs67756714	0.88[EUR][1000 genomes]
rs67805055	0.88[EUR][1000 genomes]
rs7140872	0.89[EUR][1000 genomes]
rs7142704	0.90[EUR][1000 genomes]
rs7142857	0.84[AMR][1000 genomes]
rs7144292	0.84[AMR][1000 genomes]
rs7147106	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7158768	0.92[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs7159808	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7160110	0.89[CEU][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs7160523	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72718804	0.86[EUR][1000 genomes]
rs7493394	0.89[EUR][1000 genomes]
rs8004787	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8007614	1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes]
rs8007620	1.00[CEU][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs8009670	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8011834	0.92[EUR][1000 genomes]
rs8013027	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs8018110	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8019978	1.00[YRI][hapmap]
rs8021583	0.92[CEU][hapmap]
rs8023197	0.92[CEU][hapmap];1.00[YRI][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs8007944	RP11-665C16.6	cis	Muscle Skeletal	GTEx
rs8007944	FBXO34	cis	cerebellum	SCAN
rs8007944	WDHD1	cis	parietal	SCAN
rs8007944	ATG14	cis	parietal	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
2	chr14:55575000-55589600	Weak transcription	Small Intestine	intestine
3	chr14:55575200-55577800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:55575200-55577800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:55575200-55577800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:55575200-55581600	Weak transcription	Pancreas	Pancrea
7	chr14:55575200-55581600	Weak transcription	Spleen	Spleen
8	chr14:55575200-55582000	Weak transcription	Right Ventricle	heart
9	chr14:55575200-55582200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:55575200-55582200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:55575200-55583000	Weak transcription	Gastric	stomach
12	chr14:55575200-55584400	Weak transcription	Esophagus	oesophagus
13	chr14:55575400-55577600	Weak transcription	HSMMtube	muscle
14	chr14:55575400-55580600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr14:55575400-55581400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr14:55575400-55582200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:55575600-55578000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr14:55575600-55584600	Weak transcription	Ovary	ovary
19	chr14:55575800-55577600	Weak transcription	Fetal Intestine Small	intestine
20	chr14:55575800-55577600	Weak transcription	Fetal Muscle Leg	muscle
21	chr14:55575800-55584800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:55576000-55578600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr14:55576200-55577800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:55576200-55581600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:55576400-55577400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:55576400-55577800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr14:55576400-55577800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr14:55576400-55580200	Weak transcription	HepG2	liver
29	chr14:55576400-55582200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr14:55576800-55577000	Enhancers	NHLF	lung
31	chr14:55576800-55577800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr14:55576800-55582200	Weak transcription	K562	blood
33	chr14:55576800-55582800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:55576800-55584400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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