Variant report

Variant	rs2094102
Chromosome Location	chr14:55591098-55591099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:55591086-55591312	K562	blood:	n/a	n/a
2	CEBPB	chr14:55591013-55591294	Hela-S3	cervix:	n/a	n/a
3	TCF12	chr14:55590512-55591119	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
LGALS3	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1009977	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1009978	0.98[EUR][1000 genomes]
rs10134800	0.90[EUR][1000 genomes]
rs10137409	0.97[EUR][1000 genomes]
rs10140857	0.87[EUR][1000 genomes]
rs10147667	0.89[EUR][1000 genomes]
rs10149435	0.96[EUR][1000 genomes]
rs10438127	0.96[EUR][1000 genomes]
rs1047556	0.97[EUR][1000 genomes]
rs11621351	0.96[EUR][1000 genomes]
rs11622740	0.97[EUR][1000 genomes]
rs15870	0.97[EUR][1000 genomes]
rs17128183	0.91[EUR][1000 genomes]
rs17832359	0.96[EUR][1000 genomes]
rs1815316	0.97[EUR][1000 genomes]
rs2075601	0.94[EUR][1000 genomes]
rs2075602	0.94[EUR][1000 genomes]
rs2075603	0.96[EUR][1000 genomes]
rs2147972	0.96[EUR][1000 genomes]
rs2340931	0.98[EUR][1000 genomes]
rs28429419	0.93[EUR][1000 genomes]
rs3818451	0.85[EUR][1000 genomes]
rs3825613	0.96[EUR][1000 genomes]
rs4644	0.95[EUR][1000 genomes]
rs4652	0.92[EUR][1000 genomes]
rs56660630	0.88[EUR][1000 genomes]
rs57970196	0.96[EUR][1000 genomes]
rs60972460	0.81[EUR][1000 genomes]
rs61508494	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6573005	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573006	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573007	0.94[EUR][1000 genomes]
rs66871576	0.96[EUR][1000 genomes]
rs67098772	0.96[EUR][1000 genomes]
rs67756714	0.96[EUR][1000 genomes]
rs67805055	0.96[EUR][1000 genomes]
rs7140872	0.97[EUR][1000 genomes]
rs7142704	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7147106	0.87[EUR][1000 genomes]
rs7159808	0.94[EUR][1000 genomes]
rs7160110	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7160523	0.94[EUR][1000 genomes]
rs72718804	0.94[EUR][1000 genomes]
rs7493394	0.97[EUR][1000 genomes]
rs8004787	0.94[EUR][1000 genomes]
rs8007614	0.86[EUR][1000 genomes]
rs8007620	0.87[EUR][1000 genomes]
rs8007944	0.92[EUR][1000 genomes]
rs8009670	0.93[EUR][1000 genomes]
rs8011834	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8013027	0.94[EUR][1000 genomes]
rs8018110	0.90[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2094102	RP11-665C16.6	cis	Muscle Skeletal	GTEx

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55570000-55594800	Enhancers	Fetal Intestine Large	intestine
2	chr14:55577600-55594800	Enhancers	Fetal Intestine Small	intestine
3	chr14:55582200-55595600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:55583800-55591600	Weak transcription	Gastric	stomach
5	chr14:55584600-55592600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr14:55585000-55591800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:55585600-55591600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:55586000-55593600	Enhancers	Left Ventricle	heart
9	chr14:55586800-55592600	Enhancers	Placenta	Placenta
10	chr14:55587000-55591600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:55587000-55595600	Enhancers	Stomach Mucosa	stomach
12	chr14:55587400-55592600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:55587600-55595600	Enhancers	Fetal Heart	heart
14	chr14:55588200-55591400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:55588200-55591600	Weak transcription	Primary B cells from cord blood	blood
16	chr14:55588200-55591600	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr14:55588400-55591600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr14:55588800-55592000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:55588800-55594400	Enhancers	Adipose Nuclei	Adipose
20	chr14:55589000-55591200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:55589000-55591200	Enhancers	Fetal Stomach	stomach
22	chr14:55589200-55592800	Enhancers	Lung	lung
23	chr14:55589200-55592800	Enhancers	Right Ventricle	heart
24	chr14:55589200-55593000	Enhancers	Right Atrium	heart
25	chr14:55589200-55593400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:55589400-55591600	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr14:55589600-55593000	Enhancers	Esophagus	oesophagus
28	chr14:55589600-55593200	Enhancers	Small Intestine	intestine
29	chr14:55589600-55594600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:55589800-55593200	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr14:55589800-55594000	Weak transcription	HSMM	muscle
32	chr14:55589800-55595600	Weak transcription	Colon Smooth Muscle	Colon
33	chr14:55590000-55591800	Weak transcription	K562	blood
34	chr14:55590000-55592000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr14:55590000-55592000	Weak transcription	GM12878-XiMat	blood
36	chr14:55590000-55593800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:55590000-55595400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr14:55590000-55595600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr14:55590000-55595600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr14:55590200-55591600	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr14:55590200-55592000	Weak transcription	HMEC	breast
42	chr14:55590200-55592600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:55590200-55593200	Enhancers	Colonic Mucosa	Colon
44	chr14:55590200-55593800	Enhancers	Duodenum Mucosa	Duodenum
45	chr14:55590200-55594000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:55590200-55595800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:55590400-55591600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:55590400-55591800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr14:55590400-55592200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr14:55590400-55592200	Weak transcription	NHLF	lung

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