Variant report

Variant	rs7147106
Chromosome Location	chr14:55652189-55652190
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55648437..55651811-chr14:55651962..55655981,4	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1009977	0.87[EUR][1000 genomes]
rs1009978	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10131926	0.87[AMR][1000 genomes]
rs10134800	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10137409	0.84[EUR][1000 genomes]
rs10142823	0.80[AMR][1000 genomes]
rs10149435	0.83[EUR][1000 genomes]
rs10150699	0.84[AMR][1000 genomes]
rs10438127	0.83[EUR][1000 genomes]
rs10467798	0.83[AMR][1000 genomes]
rs1047556	0.84[EUR][1000 genomes]
rs11621351	0.83[EUR][1000 genomes]
rs11622740	0.84[EUR][1000 genomes]
rs13379169	0.81[AMR][1000 genomes]
rs15870	0.84[EUR][1000 genomes]
rs17128183	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17832359	0.83[EUR][1000 genomes]
rs1815316	0.84[EUR][1000 genomes]
rs1952087	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2075601	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2075602	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2075603	0.83[EUR][1000 genomes]
rs2094102	0.87[EUR][1000 genomes]
rs2147972	0.83[EUR][1000 genomes]
rs2340931	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2341621	0.83[AMR][1000 genomes]
rs2341622	0.83[AMR][1000 genomes]
rs28429419	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3818451	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3825613	0.83[EUR][1000 genomes]
rs4644	0.82[EUR][1000 genomes]
rs4652	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56660630	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57970196	0.83[EUR][1000 genomes]
rs61508494	0.86[EUR][1000 genomes]
rs6573005	0.87[EUR][1000 genomes]
rs6573006	0.87[EUR][1000 genomes]
rs6573007	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573009	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6573010	0.84[AMR][1000 genomes]
rs6573014	0.83[AMR][1000 genomes]
rs66871576	0.83[EUR][1000 genomes]
rs67098772	0.83[EUR][1000 genomes]
rs67756714	0.83[EUR][1000 genomes]
rs67805055	0.83[EUR][1000 genomes]
rs7140872	0.84[EUR][1000 genomes]
rs7142704	0.87[EUR][1000 genomes]
rs7142857	0.87[AMR][1000 genomes]
rs7144292	0.87[AMR][1000 genomes]
rs7146752	0.81[AMR][1000 genomes]
rs7159808	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7160110	0.87[EUR][1000 genomes]
rs7160523	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72718804	0.83[EUR][1000 genomes]
rs7493394	0.84[EUR][1000 genomes]
rs8004787	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8007614	0.80[EUR][1000 genomes]
rs8007620	0.81[EUR][1000 genomes]
rs8007944	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8009670	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8011834	0.87[EUR][1000 genomes]
rs8013027	0.83[EUR][1000 genomes]
rs8018110	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
4	chr14:55606600-55656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:55607000-55656000	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:55607200-55652200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:55607600-55655200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:55610600-55655400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:55610600-55655600	Strong transcription	Dnd41	blood
10	chr14:55610800-55656000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr14:55611000-55656000	Weak transcription	Fetal Heart	heart
12	chr14:55611600-55656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:55613400-55657800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:55623600-55657000	Weak transcription	Fetal Muscle Leg	muscle
15	chr14:55629200-55655600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:55630200-55656600	Weak transcription	Fetal Brain Female	brain
17	chr14:55632400-55656200	Weak transcription	HSMM	muscle
18	chr14:55634200-55655400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:55634400-55656200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr14:55637200-55655600	Strong transcription	Fetal Thymus	thymus
21	chr14:55638200-55656200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr14:55638600-55657200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr14:55639800-55654200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:55645800-55656800	Weak transcription	Fetal Intestine Large	intestine
25	chr14:55645800-55657400	Weak transcription	Fetal Intestine Small	intestine
26	chr14:55646800-55657200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr14:55647400-55656000	Weak transcription	NH-A	brain
28	chr14:55647600-55655800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr14:55647800-55653200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr14:55647800-55653400	Weak transcription	Thymus	Thymus
31	chr14:55647800-55656000	Weak transcription	HMEC	breast
32	chr14:55647800-55656200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:55648200-55653200	Weak transcription	K562	blood
34	chr14:55648400-55654800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:55648400-55656000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:55648400-55656200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr14:55648400-55656200	Weak transcription	NHLF	lung
38	chr14:55648400-55656600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr14:55648400-55656800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr14:55648800-55656200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr14:55649000-55656000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr14:55649000-55656000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr14:55649000-55656200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:55649200-55656000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr14:55649800-55656000	Weak transcription	HepG2	liver
46	chr14:55649800-55657600	Weak transcription	Placenta	Placenta
47	chr14:55650200-55656000	Weak transcription	Fetal Lung	lung
48	chr14:55650400-55653400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr14:55650600-55654400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr14:55650600-55656200	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links