Variant report

Variant	rs10142823
Chromosome Location	chr14:55743405-55743406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55736955..55739749-chr14:55742518..55745062,4	MCF-7	breast:
2	chr14:55523578..55526318-chr14:55741498..55744199,2	K562	blood:
3	chr14:55742882..55744479-chr14:55746766..55748710,2	K562	blood:
4	chr14:55741219..55743724-chr14:55842987..55845044,2	K562	blood:
5	chr14:55737408..55740170-chr14:55742761..55744765,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10131913	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10131926	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10134800	0.81[AMR][1000 genomes]
rs10139083	0.91[EUR][1000 genomes]
rs10139337	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10139678	0.90[EUR][1000 genomes]
rs10140801	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10140869	0.85[EUR][1000 genomes]
rs10141483	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10141552	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10142547	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10142803	0.80[ASN][1000 genomes]
rs10144345	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10145203	0.89[EUR][1000 genomes]
rs10149420	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10150699	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10467798	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1109170	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11547116	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11625001	0.93[EUR][1000 genomes]
rs11625423	0.87[EUR][1000 genomes]
rs11625968	0.82[ASN][1000 genomes]
rs11628437	0.89[EUR][1000 genomes]
rs12050099	0.89[EUR][1000 genomes]
rs13379169	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17740741	0.89[EUR][1000 genomes]
rs1815581	0.81[AMR][1000 genomes]
rs1952087	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2009291	0.80[EUR][1000 genomes]
rs2075601	0.83[AMR][1000 genomes]
rs2075602	0.83[AMR][1000 genomes]
rs2182797	0.82[ASN][1000 genomes]
rs2341621	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2341622	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28568813	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28631821	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28716725	0.81[EUR][1000 genomes]
rs3783650	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3825616	0.81[AMR][1000 genomes]
rs4366639	0.87[EUR][1000 genomes]
rs4496026	0.87[EUR][1000 genomes]
rs4519260	0.85[AMR][1000 genomes]
rs4597235	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56270323	0.80[ASN][1000 genomes]
rs56949365	0.87[EUR][1000 genomes]
rs58260073	0.92[EUR][1000 genomes]
rs59629906	0.90[EUR][1000 genomes]
rs59871474	0.90[EUR][1000 genomes]
rs60248556	0.93[EUR][1000 genomes]
rs61210954	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6573009	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573010	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6573012	0.87[AMR][1000 genomes]
rs6573014	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573017	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66696758	0.92[EUR][1000 genomes]
rs67514154	0.92[EUR][1000 genomes]
rs68046603	0.90[EUR][1000 genomes]
rs7142857	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7144292	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7146748	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7146752	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7147106	0.80[AMR][1000 genomes]
rs7148171	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7153110	0.80[EUR][1000 genomes]
rs7153612	0.89[EUR][1000 genomes]
rs7153645	0.92[EUR][1000 genomes]
rs7154889	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7158768	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7158861	0.80[EUR][1000 genomes]
rs7159144	0.80[EUR][1000 genomes]
rs7159808	0.83[AMR][1000 genomes]
rs7160523	0.80[AMR][1000 genomes]
rs72715769	0.93[EUR][1000 genomes]
rs8004787	0.83[AMR][1000 genomes]
rs8006525	0.80[EUR][1000 genomes]
rs8011288	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8018110	0.86[AMR][1000 genomes]
rs8021583	0.94[EUR][1000 genomes]
rs8022041	0.80[EUR][1000 genomes]
rs8022225	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9323284	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs943590	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs946059	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10142823	RP11-665C16.6	cis	Muscle Skeletal	GTEx

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55739000-55751400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:55739000-55755600	Weak transcription	Gastric	stomach
3	chr14:55739200-55745600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:55739200-55768400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:55739600-55744400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:55739600-55744800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr14:55739600-55744800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr14:55739600-55745400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr14:55739600-55745400	Weak transcription	Fetal Stomach	stomach
10	chr14:55739800-55744200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr14:55740000-55743600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr14:55740000-55745600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr14:55740000-55746400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:55740000-55751400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:55740000-55751400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:55740000-55770600	Weak transcription	Colonic Mucosa	Colon
17	chr14:55740200-55744800	Enhancers	HepG2	liver
18	chr14:55740200-55746400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:55740200-55754200	Weak transcription	Hela-S3	cervix
20	chr14:55740400-55743600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:55740400-55743800	Weak transcription	Primary B cells from cord blood	blood
22	chr14:55740400-55743800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr14:55740600-55744000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr14:55740600-55744600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:55740600-55751400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr14:55740800-55744000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr14:55740800-55744000	Weak transcription	Ovary	ovary
28	chr14:55740800-55744000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:55740800-55744200	Weak transcription	Pancreas	Pancrea
30	chr14:55740800-55744600	Weak transcription	Lung	lung
31	chr14:55740800-55750800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:55740800-55751400	Weak transcription	Placenta	Placenta
33	chr14:55740800-55752000	Weak transcription	Esophagus	oesophagus
34	chr14:55741000-55743600	Weak transcription	Small Intestine	intestine
35	chr14:55741000-55744000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr14:55741000-55744000	Weak transcription	Spleen	Spleen
37	chr14:55741000-55744200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr14:55741000-55744200	Weak transcription	Fetal Thymus	thymus
39	chr14:55741000-55744200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr14:55741000-55744200	Weak transcription	Thymus	Thymus
41	chr14:55741000-55744600	Weak transcription	Psoas Muscle	Psoas
42	chr14:55741000-55744800	Enhancers	Dnd41	blood
43	chr14:55741000-55746600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:55741000-55764600	Weak transcription	Fetal Muscle Leg	muscle
45	chr14:55741000-55773200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr14:55741200-55743600	Weak transcription	Fetal Intestine Large	intestine
47	chr14:55741200-55744000	Enhancers	K562	blood
48	chr14:55741200-55744200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr14:55741200-55744200	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr14:55741200-55749000	Weak transcription	Right Atrium	heart

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