Variant report

Variant	rs2341621
Chromosome Location	chr14:55726425-55726426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55725899..55727462-chr14:55737398..55739449,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258413	Chromatin interaction
ENSG00000178974	Chromatin interaction

Extended variants
information (count: 117 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs1009978	0.85[CEU][hapmap]
rs10131913	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10131926	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10134339	0.92[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap]
rs10134800	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10136596	0.93[CEU][hapmap]
rs10137307	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs10139083	0.91[EUR][1000 genomes]
rs10139337	0.90[EUR][1000 genomes]
rs10139678	0.90[EUR][1000 genomes]
rs10140801	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10140869	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs10141483	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10141552	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs10142448	0.92[CEU][hapmap]
rs10142547	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10142823	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10144345	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10144418	0.89[CEU][hapmap]
rs10145203	0.89[EUR][1000 genomes]
rs10147667	0.81[CEU][hapmap]
rs10149420	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10150699	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10150760	0.92[CEU][hapmap]
rs1045002	0.93[CEU][hapmap]
rs10467798	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1109170	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11547116	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11625001	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs11625423	0.88[EUR][1000 genomes]
rs11625968	0.96[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap]
rs11628437	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs11851169	0.96[CEU][hapmap]
rs12050099	0.89[EUR][1000 genomes]
rs13379169	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1572611	0.82[CEU][hapmap]
rs17128440	0.81[EUR][1000 genomes]
rs17674463	0.93[CEU][hapmap]
rs17740741	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs17741542	0.96[CEU][hapmap]
rs17741831	0.93[CEU][hapmap]
rs1815581	0.82[AMR][1000 genomes]
rs1952087	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2009291	0.92[CEU][hapmap];0.80[CHB][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2075601	0.88[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2075602	0.88[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2147964	1.00[YRI][hapmap]
rs2340921	1.00[YRI][hapmap]
rs2340931	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs2341622	0.96[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28568813	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28631821	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28716725	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2880103	0.81[JPT][hapmap]
rs3742569	0.92[CEU][hapmap]
rs3783650	0.96[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3783651	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs3783652	0.96[CEU][hapmap]
rs3818451	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs3825616	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4366639	0.88[EUR][1000 genomes]
rs4496026	0.88[EUR][1000 genomes]
rs4519260	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4597235	0.96[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4652	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs56949365	0.87[EUR][1000 genomes]
rs58260073	0.92[EUR][1000 genomes]
rs59629906	0.90[EUR][1000 genomes]
rs59871474	0.90[EUR][1000 genomes]
rs60248556	0.92[EUR][1000 genomes]
rs61210954	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6573007	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs6573009	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6573010	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573012	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6573013	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs6573014	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6573017	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6573020	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs66696758	0.92[EUR][1000 genomes]
rs67514154	0.91[EUR][1000 genomes]
rs68046603	0.90[EUR][1000 genomes]
rs7142857	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7144292	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7144737	0.92[CEU][hapmap]
rs7146748	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7146752	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7147106	0.83[AMR][1000 genomes]
rs7148171	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7153110	0.92[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.80[EUR][1000 genomes]
rs7153612	0.89[EUR][1000 genomes]
rs7153645	0.92[EUR][1000 genomes]
rs7154889	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7158768	0.96[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7158861	0.80[EUR][1000 genomes]
rs7159144	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7159808	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7160523	0.88[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs72715769	0.93[EUR][1000 genomes]
rs8004787	0.92[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8006525	0.93[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs8007614	0.88[CEU][hapmap]
rs8007620	0.89[CEU][hapmap]
rs8009670	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs8011288	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8013027	0.82[CEU][hapmap]
rs8013713	0.96[CEU][hapmap]
rs8018110	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8019978	1.00[YRI][hapmap]
rs8021583	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs8022225	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8023197	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs9323284	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9323285	0.81[JPT][hapmap]
rs943590	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs946059	0.96[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9919926	0.85[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2341621	RP11-665C16.6	cis	Muscle Skeletal	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links