Variant report

Variant	rs2340921
Chromosome Location	chr14:55563705-55563706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55555833..55558389-chr14:55562200..55563979,2	MCF-7	breast:
2	chr14:55562349..55566055-chr14:55567766..55570193,3	K562	blood:
3	chr14:55559019..55561497-chr14:55562347..55564712,2	K562	blood:
4	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:
5	chr14:55561171..55564050-chr14:55565929..55567556,2	K562	blood:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1002054	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs10131768	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10145268	0.81[CEU][hapmap]
rs10220693	0.82[EUR][1000 genomes]
rs10467798	1.00[YRI][hapmap]
rs11848846	0.90[EUR][1000 genomes]
rs11849961	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1187877	0.81[CEU][hapmap]
rs1201378	0.81[CEU][hapmap]
rs1209087	0.81[CEU][hapmap]
rs13379159	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs17832311	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2075601	1.00[YRI][hapmap]
rs2075602	1.00[YRI][hapmap]
rs2147964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2251366	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs2341621	1.00[YRI][hapmap]
rs2341622	1.00[YRI][hapmap]
rs3818451	1.00[YRI][hapmap]
rs4652	1.00[YRI][hapmap]
rs56262555	0.92[EUR][1000 genomes]
rs56725788	0.82[EUR][1000 genomes]
rs61975407	0.81[EUR][1000 genomes]
rs6572999	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs6573000	0.82[EUR][1000 genomes]
rs6573001	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6573009	1.00[YRI][hapmap]
rs6573013	1.00[YRI][hapmap]
rs7141975	0.82[EUR][1000 genomes]
rs7144652	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs7158768	1.00[YRI][hapmap]
rs7159808	1.00[YRI][hapmap]
rs7160523	1.00[YRI][hapmap]
rs7161656	0.81[EUR][1000 genomes]
rs8003624	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8004416	0.92[EUR][1000 genomes]
rs8004787	1.00[YRI][hapmap]
rs8005399	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs8008134	0.81[CEU][hapmap]
rs8009670	1.00[YRI][hapmap]
rs8012156	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs8012676	0.90[EUR][1000 genomes]
rs8019978	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8021929	0.82[EUR][1000 genomes]
rs8022238	0.81[EUR][1000 genomes]
rs873061	0.81[ASN][1000 genomes]
rs9323278	0.83[EUR][1000 genomes]
rs9806049	0.88[CEU][hapmap]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
2	chr14:55556400-55564000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr14:55557800-55568600	Weak transcription	Fetal Heart	heart
4	chr14:55559000-55563800	Weak transcription	GM12878-XiMat	blood
5	chr14:55559200-55569000	Weak transcription	Esophagus	oesophagus
6	chr14:55559600-55564000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:55559600-55564200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:55559800-55563800	Weak transcription	Adipose Nuclei	Adipose
9	chr14:55559800-55564000	Weak transcription	Fetal Intestine Large	intestine
10	chr14:55560000-55564000	Weak transcription	Colonic Mucosa	Colon
11	chr14:55560000-55564000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:55560000-55564000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:55560000-55564200	Weak transcription	Fetal Intestine Small	intestine
14	chr14:55560200-55564000	Weak transcription	Stomach Mucosa	stomach
15	chr14:55560400-55564200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr14:55560600-55569200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:55561200-55568000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr14:55561600-55563800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:55561600-55564600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr14:55561600-55565000	Weak transcription	Fetal Muscle Leg	muscle
21	chr14:55561800-55564000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:55561800-55564600	Weak transcription	A549	lung
23	chr14:55561800-55564800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:55561800-55568400	Weak transcription	HMEC	breast
25	chr14:55561800-55568800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr14:55562000-55563800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr14:55562000-55564200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:55562000-55564600	Weak transcription	NHDF-Ad	bronchial
29	chr14:55562000-55564800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:55562000-55564800	Weak transcription	NH-A	brain
31	chr14:55562000-55566400	Weak transcription	NHLF	lung
32	chr14:55562000-55566600	Weak transcription	Osteobl	bone
33	chr14:55562000-55568800	Weak transcription	HSMM	muscle
34	chr14:55562200-55564000	Weak transcription	Small Intestine	intestine
35	chr14:55562200-55564200	Weak transcription	NHEK	skin
36	chr14:55562400-55563800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:55562400-55564200	Weak transcription	Hela-S3	cervix
38	chr14:55562400-55565000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr14:55562400-55565000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:55562600-55563800	Weak transcription	Placenta	Placenta
41	chr14:55563600-55564200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr14:55563600-55564600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:55563600-55565200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr14:55563600-55565600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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