Variant report

Variant	rs7161656
Chromosome Location	chr14:55524530-55524531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55523578..55526318-chr14:55741498..55744199,2	K562	blood:
2	chr14:55524393..55526370-chr14:55595207..55597069,2	MCF-7	breast:
3	chr14:55523912..55526776-chr14:55532396..55534870,2	K562	blood:
4	chr14:55522230..55525197-chr14:55589404..55592013,2	K562	blood:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1002054	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10135721	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10145170	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10145268	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10220693	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11848846	0.84[EUR][1000 genomes]
rs11849090	0.85[ASN][1000 genomes]
rs11849878	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11849961	0.86[EUR][1000 genomes]
rs11851178	0.89[ASN][1000 genomes]
rs1187876	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1187877	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1187878	0.87[ASN][1000 genomes]
rs1187881	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1187882	0.81[ASN][1000 genomes]
rs1187883	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1201378	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1209087	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13379159	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17128128	0.89[ASN][1000 genomes]
rs17128132	0.89[ASN][1000 genomes]
rs17128145	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17832311	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1952085	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2147964	0.81[EUR][1000 genomes]
rs2251366	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2340921	0.81[EUR][1000 genomes]
rs3742564	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56262555	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56725788	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60805089	0.89[ASN][1000 genomes]
rs6572999	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6573000	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6573001	0.82[EUR][1000 genomes]
rs7141975	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7144652	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149965	0.89[ASN][1000 genomes]
rs7150145	0.81[ASN][1000 genomes]
rs7151224	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7151431	0.90[ASN][1000 genomes]
rs748017	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8004416	0.86[EUR][1000 genomes]
rs8005399	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8008134	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8012156	0.83[EUR][1000 genomes]
rs8012676	0.84[EUR][1000 genomes]
rs8019978	0.82[EUR][1000 genomes]
rs8021929	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8022238	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8022405	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9323278	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9806049	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55519200-55529400	Weak transcription	Spleen	Spleen
2	chr14:55519400-55524600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:55519400-55529200	Weak transcription	Pancreas	Pancrea
4	chr14:55519600-55524600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:55519600-55524800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:55519600-55528600	Weak transcription	Colonic Mucosa	Colon
7	chr14:55519600-55529400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:55519600-55529400	Weak transcription	Esophagus	oesophagus
9	chr14:55519600-55534400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:55519600-55538000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:55519800-55526200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:55520000-55526000	Weak transcription	Brain Hippocampus Middle	brain
13	chr14:55520000-55528600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr14:55520000-55529400	Weak transcription	Aorta	Aorta
15	chr14:55520000-55529400	Weak transcription	Fetal Brain Female	brain
16	chr14:55520200-55528000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr14:55520200-55528400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr14:55520200-55529000	Weak transcription	Brain Anterior Caudate	brain
19	chr14:55520200-55529000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:55520200-55529200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr14:55520200-55529600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:55520200-55538400	Weak transcription	Fetal Kidney	kidney
23	chr14:55520400-55524600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr14:55520400-55524600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:55520400-55526000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:55520400-55526600	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr14:55520400-55529000	Weak transcription	Brain Germinal Matrix	brain
28	chr14:55520400-55538200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr14:55520600-55524600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr14:55520600-55526600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:55520600-55528400	Weak transcription	Colon Smooth Muscle	Colon
32	chr14:55520600-55528600	Weak transcription	Stomach Mucosa	stomach
33	chr14:55520600-55528600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr14:55520600-55529000	Weak transcription	Fetal Lung	lung
35	chr14:55520600-55529000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr14:55520600-55529200	Weak transcription	Brain Substantia Nigra	brain
37	chr14:55520600-55533600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr14:55520600-55535000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:55520600-55538000	Weak transcription	Psoas Muscle	Psoas
40	chr14:55520600-55538600	Weak transcription	Fetal Brain Male	brain
41	chr14:55520800-55524600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:55520800-55524600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr14:55520800-55526800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
44	chr14:55520800-55529400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr14:55520800-55529400	Weak transcription	Brain Angular Gyrus	brain
46	chr14:55520800-55534800	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr14:55520800-55535200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:55521000-55529600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr14:55521200-55524800	Weak transcription	HMEC	breast
50	chr14:55521200-55528400	Weak transcription	Liver	Liver

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