Variant report

Variant	rs8012156
Chromosome Location	chr14:55552500-55552501
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55540374..55545656-chr14:55545839..55552985,7	K562	blood:
2	chr14:55551518..55553277-chr14:55554973..55556876,2	MCF-7	breast:
3	chr14:55550347..55552515-chr14:55555863..55558677,2	K562	blood:
4	chr14:55541160..55544026-chr14:55549457..55552985,4	K562	blood:
5	chr14:55550357..55576811-chr14:55577745..55605179,160	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1002054	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10131768	0.85[EUR][1000 genomes]
rs10140164	0.81[JPT][hapmap]
rs10145268	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10220693	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1107960	0.81[JPT][hapmap]
rs11848846	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11851178	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs1187876	0.84[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1187877	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1187878	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1187882	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1187883	0.81[JPT][hapmap]
rs1201378	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1209087	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs13379159	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17128120	0.87[JPT][hapmap]
rs17128132	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs17128145	0.93[CHB][hapmap];0.81[JPT][hapmap]
rs17832311	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1952085	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs2147964	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs2251366	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2340921	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs2878172	0.81[JPT][hapmap]
rs2878174	0.87[JPT][hapmap]
rs3742564	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4335711	0.81[JPT][hapmap]
rs56262555	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56725788	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6572999	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6573000	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6573001	0.89[EUR][1000 genomes]
rs7141975	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7144652	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7146285	0.87[JPT][hapmap]
rs7149965	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs7150145	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs7151224	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7153937	0.81[JPT][hapmap]
rs7161656	0.83[EUR][1000 genomes]
rs748017	0.81[EUR][1000 genomes]
rs8003624	0.85[EUR][1000 genomes]
rs8004416	0.91[EUR][1000 genomes]
rs8005399	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8008134	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs8012152	0.87[JPT][hapmap]
rs8012676	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8019390	0.81[JPT][hapmap]
rs8019978	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs8020545	0.81[JPT][hapmap]
rs8021929	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8022049	0.87[JPT][hapmap]
rs8022238	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9323278	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9806049	0.88[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:55544200-55556800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:55544400-55556200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr14:55544800-55557000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:55545000-55561400	Weak transcription	HMEC	breast
8	chr14:55547000-55557200	Weak transcription	Hela-S3	cervix
9	chr14:55549200-55559800	Weak transcription	Ovary	ovary
10	chr14:55551200-55552800	Enhancers	Fetal Intestine Large	intestine
11	chr14:55551200-55552800	Enhancers	Fetal Intestine Small	intestine
12	chr14:55551400-55560800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:55551400-55564800	Weak transcription	Right Atrium	heart
14	chr14:55551600-55556200	Weak transcription	GM12878-XiMat	blood
15	chr14:55552000-55557400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr14:55552200-55557000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr14:55552200-55558400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:55552400-55558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:55552400-55559800	Weak transcription	Stomach Mucosa	stomach

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