Variant report

Variant	rs10220693
Chromosome Location	chr14:55545062-55545063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55544550..55546055-chr14:55553686..55556221,2	K562	blood:
2	chr14:55518983..55521078-chr14:55544190..55545895,2	K562	blood:
3	chr14:55540374..55545656-chr14:55545839..55552985,7	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1002054	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10135721	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10145170	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10145268	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11848846	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11849090	0.83[ASN][1000 genomes]
rs11849878	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11849961	0.83[EUR][1000 genomes]
rs11851178	0.87[ASN][1000 genomes]
rs1187876	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1187877	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1187878	0.85[ASN][1000 genomes]
rs1187881	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1187883	0.82[EUR][1000 genomes]
rs1201378	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1209087	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13379159	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17128128	0.87[ASN][1000 genomes]
rs17128132	0.87[ASN][1000 genomes]
rs17128145	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17832311	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1952085	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2147964	0.82[EUR][1000 genomes]
rs2251366	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2340921	0.82[EUR][1000 genomes]
rs3742564	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56262555	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56725788	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60805089	0.87[ASN][1000 genomes]
rs6572999	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6573000	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6573001	0.83[EUR][1000 genomes]
rs7141975	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7144652	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7149965	0.87[ASN][1000 genomes]
rs7151224	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7151431	0.86[ASN][1000 genomes]
rs7161656	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs748017	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8004416	0.86[EUR][1000 genomes]
rs8005399	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8008134	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8012156	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8012676	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8019978	0.83[EUR][1000 genomes]
rs8021929	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8022238	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8022405	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9323278	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9806049	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55541600-55556800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:55543600-55545800	Enhancers	Placenta	Placenta
4	chr14:55543600-55546400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:55543800-55545200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:55543800-55545400	Enhancers	Fetal Intestine Large	intestine
7	chr14:55544200-55556800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:55544400-55556200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr14:55544600-55545600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:55544600-55545800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:55544600-55545800	Weak transcription	GM12878-XiMat	blood
12	chr14:55544800-55545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:55544800-55545800	Weak transcription	HSMMtube	muscle
14	chr14:55544800-55546000	Weak transcription	HSMM	muscle
15	chr14:55544800-55546200	Enhancers	Fetal Intestine Small	intestine
16	chr14:55544800-55557000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:55544800-55558600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:55545000-55545600	Enhancers	Hela-S3	cervix
19	chr14:55545000-55546200	Enhancers	NHEK	skin
20	chr14:55545000-55561400	Weak transcription	HMEC	breast

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