Variant report

Variant	rs17832311
Chromosome Location	chr14:55534466-55534467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:55523912..55526776-chr14:55532396..55534870,2	K562	blood:
2	chr14:55534010..55536962-chr14:55595288..55598259,2	MCF-7	breast:
3	chr14:55524853..55528129-chr14:55532320..55535008,3	MCF-7	breast:
4	chr14:55518413..55520075-chr14:55533737..55537163,3	MCF-7	breast:
5	chr14:55488106..55490294-chr14:55532250..55534527,2	MCF-7	breast:
6	chr14:55532973..55535677-chr14:55615169..55617966,2	MCF-7	breast:
7	chr14:55532764..55536002-chr14:55540824..55544423,3	MCF-7	breast:
8	chr14:55533388..55535335-chr14:55617293..55618856,2	K562	blood:
9	chr14:55529631..55531786-chr14:55534351..55536997,3	MCF-7	breast:
10	chr14:55516948..55521248-chr14:55532171..55537345,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000131981	Chromatin interaction
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1002054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135721	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10140164	0.81[JPT][hapmap]
rs10145170	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10145268	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10220693	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1107960	0.80[JPT][hapmap]
rs11848846	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11849090	0.86[ASN][1000 genomes]
rs11849878	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11849961	0.89[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs11851178	1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[JPT][hapmap];0.83[TSI][hapmap];0.90[ASN][1000 genomes]
rs1187876	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1187877	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1187878	0.93[CHB][hapmap];0.92[CHD][hapmap];0.87[JPT][hapmap];0.83[TSI][hapmap];0.88[ASN][1000 genomes]
rs1187881	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1187882	0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs1187883	0.81[CEU][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes]
rs1201378	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1209087	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13379159	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17128120	0.87[JPT][hapmap]
rs17128128	0.90[ASN][1000 genomes]
rs17128132	1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[JPT][hapmap];0.83[TSI][hapmap];0.90[ASN][1000 genomes]
rs17128145	1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1952085	1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[JPT][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2147964	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2251366	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2340921	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2878172	0.81[JPT][hapmap]
rs2878174	0.87[JPT][hapmap]
rs3742564	1.00[ASW][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4335711	0.81[JPT][hapmap]
rs56262555	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56725788	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60805089	0.90[ASN][1000 genomes]
rs6572999	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573000	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573001	0.82[EUR][1000 genomes]
rs7141975	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7144652	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7146285	0.87[JPT][hapmap]
rs7149965	1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.81[TSI][hapmap];0.90[ASN][1000 genomes]
rs7150145	1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs7151224	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7151431	0.89[ASN][1000 genomes]
rs7153937	0.81[JPT][hapmap]
rs7161656	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs748017	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8004416	0.86[EUR][1000 genomes]
rs8005399	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008134	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.94[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8012152	0.87[JPT][hapmap]
rs8012156	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8012676	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8019390	0.81[JPT][hapmap]
rs8019978	0.85[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs8020545	0.81[JPT][hapmap]
rs8021929	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8022049	0.87[JPT][hapmap]
rs8022238	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8022405	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9323278	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806049	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.93[JPT][hapmap];0.81[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17832311	ATG14	cis	parietal	SCAN
rs17832311	FBXO34	cis	cerebellum	SCAN
rs17832311	WDHD1	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55519600-55538000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:55520200-55538400	Weak transcription	Fetal Kidney	kidney
3	chr14:55520400-55538200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:55520600-55535000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:55520600-55538000	Weak transcription	Psoas Muscle	Psoas
6	chr14:55520600-55538600	Weak transcription	Fetal Brain Male	brain
7	chr14:55520800-55534800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr14:55520800-55535200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:55521600-55535400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:55521600-55535400	Strong transcription	NHEK	skin
11	chr14:55522000-55535600	Strong transcription	Fetal Thymus	thymus
12	chr14:55522600-55536600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:55523600-55535200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr14:55524200-55535400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr14:55524400-55536600	Strong transcription	Osteobl	bone
16	chr14:55524600-55534800	Strong transcription	Muscle Satellite Cultured Cells	--
17	chr14:55524800-55535600	Strong transcription	A549	lung
18	chr14:55524800-55535800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:55526000-55534800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr14:55526200-55536000	Strong transcription	Primary hematopoietic stem cells	blood
21	chr14:55526400-55538000	Weak transcription	Small Intestine	intestine
22	chr14:55526600-55535800	Strong transcription	Dnd41	blood
23	chr14:55526600-55537600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:55526600-55538400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr14:55527400-55535200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr14:55527600-55534800	Strong transcription	HUVEC	blood vessel
27	chr14:55528000-55534600	Strong transcription	NH-A	brain
28	chr14:55528200-55534600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:55529400-55535000	Strong transcription	Primary B cells from cord blood	blood
30	chr14:55529400-55536800	Strong transcription	HSMM	muscle
31	chr14:55529400-55538400	Weak transcription	Fetal Heart	heart
32	chr14:55529600-55535200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:55529800-55534800	Strong transcription	Liver	Liver
34	chr14:55529800-55538000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr14:55530000-55535000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr14:55530000-55538000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:55530000-55538000	Weak transcription	Brain Angular Gyrus	brain
38	chr14:55530000-55538000	Weak transcription	Left Ventricle	heart
39	chr14:55530000-55538000	Weak transcription	Lung	lung
40	chr14:55530000-55538400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:55530000-55538400	Weak transcription	Pancreas	Pancrea
42	chr14:55530000-55538600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr14:55530000-55538600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr14:55530000-55538600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr14:55530000-55538600	Weak transcription	Ovary	ovary
46	chr14:55530000-55544200	Weak transcription	Right Atrium	heart
47	chr14:55530000-55544200	Weak transcription	Right Ventricle	heart
48	chr14:55530000-55554000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:55530200-55538000	Weak transcription	Brain Hippocampus Middle	brain
50	chr14:55530200-55538000	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links